{"id":"W2914667494","doi":"10.1093/molbev/msz016","title":"Rapid Genetic Code Evolution in Green Algal Mitochondrial Genomes","year":2019,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Montreal Clinical Research Institute; Université de Montréal","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Genetic code; Codon usage bias; Genetics; Transfer RNA; Mitochondrial DNA; Genome; Gene; Stop codon; Evolutionary biology; RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001121674,0.0001889824,0.0001984259,0.00009452241,0.00006742733,0.000008538767,0.0001282727,0.0002810805,0.00001359717],"category_scores_gemma":[0.00002266808,0.0001897429,0.00007315355,0.00009406046,0.0001236325,0.000001378589,0.0001470458,0.00009616731,0.00002382984],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003906515,"about_ca_system_score_gemma":0.00005698117,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001572269,"about_ca_topic_score_gemma":0.000160321,"domain_scores_codex":[0.9987534,0.0001272791,0.0002284169,0.0005061405,0.00005856989,0.0003262192],"domain_scores_gemma":[0.9995486,0.00000904626,0.00006793459,0.000271454,0.00004690388,0.0000560201],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001010024,0.00002574225,0.1609818,0.00001119013,0.00004700926,0.000002084202,0.00002691966,0.000110855,0.8359897,0.001192456,0.00003939367,0.001471829],"study_design_scores_gemma":[0.002539214,0.001169626,0.9507347,0.00001726633,0.00004810314,0.00005660253,0.0001034944,0.0006784689,0.02261456,0.008600951,0.01281999,0.000617069],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9748097,0.01913005,0.004748789,0.000140338,0.0003728566,0.0003218639,0.00002721587,0.000005593814,0.0004435978],"genre_scores_gemma":[0.9977043,0.000510818,0.001214941,0.0001214575,0.0001717106,0.00003047862,0.00006961921,0.00001732051,0.0001593906],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8133752,"threshold_uncertainty_score":0.7737491,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005170482350475314,"score_gpt":0.2215012125620441,"score_spread":0.2163307302115688,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}