{"id":"W2915086611","doi":"10.1038/s41598-019-38792-4","title":"Modelling and Analyzing Virus Mutation Dynamics of Chikungunya Outbreaks","year":2019,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"York University","funders":"Natural Science Foundation of Shanxi Province; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China; International Development Research Centre; Yuncheng University","keywords":"Chikungunya; Outbreak; Virology; Virus; Transmission (telecommunications); Basic reproduction number; Alphavirus infection; Biology; Mutation; Mutation rate; Vector (molecular biology); Aedes albopictus; Aedes aegypti; Genetics; Population; Medicine; Ecology; Environmental health; Gene; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008443322,0.000541542,0.0006689958,0.000503209,0.0003043103,0.0007468858,0.0008046922,0.001081755,0.0009473388],"category_scores_gemma":[0.003699561,0.0004195897,0.0007653372,0.0003739257,0.000593012,0.0008915281,0.0004354892,0.0006577135,0.0001217964],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001280798,"about_ca_system_score_gemma":0.001135698,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03452925,"about_ca_topic_score_gemma":0.01325826,"domain_scores_codex":[0.9997767,0.0001053849,0.00001180901,0.00003837016,0.00002296783,0.00004478852],"domain_scores_gemma":[0.9984164,0.001201548,0.0002118093,0.00003677875,0.00007005882,0.00006329722],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00001234464,0.0000116316,0.003493557,0.00001890838,0.00001981383,0.00005591085,0.00002442974,0.9936581,0.0003604667,0.00146299,0.00008578309,0.0007960992],"study_design_scores_gemma":[0.000003216529,0.000007623284,0.0006721903,0.000003163353,0.000006177404,0.00001154541,0.000009676712,0.9985738,0.00005679975,0.0005966757,0.00005527821,0.000003828369],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9059614,0.0006989142,0.0873453,0.0005415546,0.0000466768,0.00007618373,0.0003237575,0.0001362304,0.004870038],"genre_scores_gemma":[0.9930555,0.0002824439,0.005585647,0.00003063098,0.00001302419,0.00004451862,0.0001028378,0.00001811461,0.0008673047],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03452925,"threshold_uncertainty_score":0.06865656,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00832769925077957,"score_gpt":0.2451847985818271,"score_spread":0.2368570993310476,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}