{"id":"W2915322648","doi":"10.3389/fmicb.2019.00206","title":"Commentary: Genome-Based Taxonomic Classification of the Phylum Actinobacteria","year":2019,"lang":"en","type":"letter","venue":"Frontiers in Microbiology","topic":"Actinomycetales infections and treatment","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Actinobacteria; Phylum; Biology; Evolutionary biology; Genome; Computational biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009254253,0.0002698699,0.0006598937,0.0002332219,0.00004532287,0.00000578268,0.0002245706,0.0006868348,0.0001481055],"category_scores_gemma":[0.0000115442,0.0001950981,0.0002541074,0.0001281108,0.0002843871,0.00002007089,0.00006130234,0.0009557317,0.00002979375],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005820311,"about_ca_system_score_gemma":0.0001534207,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004964118,"about_ca_topic_score_gemma":0.0000039522,"domain_scores_codex":[0.9987051,0.0001919686,0.0003972779,0.0003769745,0.00003942247,0.0002892811],"domain_scores_gemma":[0.998824,0.00005709065,0.0004329603,0.0006312797,0.00003944233,0.00001523656],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007968728,0.0001250508,0.1118824,0.0001493752,0.0002624461,0.00001657977,0.00001532592,0.000002452796,0.02821937,5.468944e-7,0.8590081,0.0002387269],"study_design_scores_gemma":[0.001605878,0.0001642561,0.03378128,0.00009422901,0.0002417311,0.0001659262,0.00003226308,0.00002317033,0.002150348,0.000005639424,0.9615624,0.0001728672],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"empirical","genre_scores_codex":[0.2205114,0.0008586803,0.001480439,0.7542586,0.01117938,0.004611734,0.001258104,0.00006488509,0.005776738],"genre_scores_gemma":[0.5631925,0.00006520831,0.004302781,0.425199,0.001041401,0.0001469606,0.004323956,0.00007977017,0.001648478],"genre_candidate":"commentary","genre_consensus":null,"teacher_disagreement_score":0.3426811,"threshold_uncertainty_score":0.7955868,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01294012164185315,"score_gpt":0.2242912424069073,"score_spread":0.2113511207650542,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}