{"id":"W2916612788","doi":"10.1101/555375","title":"Discovery of several thousand highly diverse circular DNA viruses","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"National Cancer Institute; National Institutes of Health","keywords":"RefSeq; GenBank; Genome; Biology; Genetics; Computational biology; Capsid; DNA; Virus; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004952755,0.0005103985,0.0007724319,0.00006904794,0.0002076908,0.0002333992,0.0009343238,0.0004087701,0.00005709867],"category_scores_gemma":[0.0002487398,0.0002421069,0.0002920083,0.0004386501,0.0002359288,0.0003206284,0.001455254,0.0005678647,0.0001081201],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001361165,"about_ca_system_score_gemma":0.0001424317,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004913055,"about_ca_topic_score_gemma":0.00002680375,"domain_scores_codex":[0.9970006,0.0002078618,0.000468364,0.0009164529,0.0007434144,0.0006632986],"domain_scores_gemma":[0.9984366,0.0002754912,0.0003935647,0.0004023714,0.000330728,0.0001612571],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005498729,0.0001319632,0.01262573,0.0002114343,0.0002041603,0.0000418254,0.000005661233,0.00004334552,0.9855044,0.00009072827,0.001083563,0.000002186557],"study_design_scores_gemma":[0.000292277,0.0001406557,0.4218879,0.0003890554,0.00009949618,1.590215e-8,0.00001302731,0.00008699192,0.5653421,0.00000405305,0.01089614,0.0008482611],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9924178,0.001146837,0.00002741298,0.0001399024,0.0006446578,0.000652797,0.004778342,0.0001719355,0.00002029474],"genre_scores_gemma":[0.9982154,0.000978503,0.0001384971,0.0001451657,0.0004364779,0.00005619547,0.000001969533,0.000008288754,0.00001946726],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4201623,"threshold_uncertainty_score":0.9872832,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03087110942310083,"score_gpt":0.2340240861598436,"score_spread":0.2031529767367427,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}