{"id":"W2916612788","doi":"10.1101/555375","title":"Discovery of several thousand highly diverse circular DNA viruses","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"National Cancer Institute; National Institutes of Health","keywords":"RefSeq; GenBank; Genome; Biology; Genetics; Computational biology; Capsid; DNA; Virus; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004745423,0.0002537329,0.0003598689,0.001079824,0.0004634603,0.0008951153,0.000295919,0.0005652625,0.001099716],"category_scores_gemma":[0.001136512,0.0003276005,0.0004005315,0.0008584731,0.0003310693,0.0004243218,0.0006143937,0.0004642931,0.0005950565],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004028645,"about_ca_system_score_gemma":0.0003127631,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000597539,"about_ca_topic_score_gemma":0.001172443,"domain_scores_codex":[0.9995834,0.00002878481,0.00002935511,0.0001929619,0.0001180176,0.00004750123],"domain_scores_gemma":[0.9992657,0.0002972606,0.0001255555,0.00008900222,0.00009062824,0.0001317886],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004106644,0.00004527938,0.03073831,0.0003225214,0.00008777645,0.0002808844,0.0002840217,0.001131428,0.9383029,0.000889652,0.0007602699,0.02674622],"study_design_scores_gemma":[0.00009196783,0.0007208934,0.279153,0.0002107449,0.0003530591,0.004550963,0.0005771813,0.03238475,0.5965368,0.004897944,0.08039707,0.0001257343],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9742646,0.00208591,0.01672792,0.0001390104,0.00005186304,0.00005318375,0.004699061,0.0003206864,0.001657843],"genre_scores_gemma":[0.895372,0.001380952,0.07108573,0.0002563761,0.0000470483,0.00008306376,0.02853569,0.0001990833,0.003040021],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001099716,"threshold_uncertainty_score":0.003678858,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03087110942310083,"score_gpt":0.2340240861598436,"score_spread":0.2031529767367427,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}