{"id":"W2916679361","doi":"10.1038/s41598-019-39161-x","title":"Prevalence of isomeric plastomes and effectiveness of plastome super-barcodes in yews (Taxus) worldwide","year":2019,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":105,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Botany, Chinese Academy of Sciences; National Taiwan University; Ministry of Science and Technology, Taiwan; University of Toronto; Chinese Academy of Sciences; National Natural Science Foundation of China; Kunming Institute of Botany, Chinese Academy of Sciences; Columbus State University","keywords":"Chloroplast DNA; Biology; Plastid; Taxus; Evolutionary biology; Genome; Endangered species; Botany; Genetics; Gene; Chloroplast; Ecology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002722935,0.0002973395,0.0003111962,0.001351753,0.0004530103,0.0005477564,0.0002616048,0.0004663486,0.001084454],"category_scores_gemma":[0.0009150233,0.0002168929,0.0002497599,0.001075664,0.0005215686,0.0005006223,0.0006609121,0.0004979474,0.000232234],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000256169,"about_ca_system_score_gemma":0.000177653,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001609399,"about_ca_topic_score_gemma":0.002740082,"domain_scores_codex":[0.9996096,0.00004283772,0.00004898309,0.0001814113,0.00005654805,0.0000605277],"domain_scores_gemma":[0.9994115,0.0001150068,0.0002209327,0.00006604558,0.0001175865,0.00006899783],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006117867,0.00005537381,0.2888433,0.000239241,0.000140122,0.0005756853,0.001842609,0.0002547739,0.6763778,0.0003499163,0.00010995,0.03059943],"study_design_scores_gemma":[0.00001788782,0.0003574963,0.9246985,0.00008947947,0.0001419444,0.002432975,0.002764524,0.001119604,0.063003,0.0002804873,0.005054581,0.00003946045],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979327,0.0003970372,0.0009109996,0.00002008266,0.000004668692,0.00001091987,0.0002656725,0.0000173728,0.0004406008],"genre_scores_gemma":[0.9967425,0.0002037085,0.001661359,0.00002425958,0.000003121098,0.00001629765,0.0008604166,0.00001260937,0.0004757956],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001609399,"threshold_uncertainty_score":0.003627837,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006000235253062795,"score_gpt":0.2158796410009006,"score_spread":0.2098794057478378,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}