{"id":"W2917099270","doi":"10.1101/563387","title":"Elucidating syntrophic butyrate-degrading populations in anaerobic digesters using stable isotope-informed genome-resolved metagenomics","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Anaerobic Digestion and Biogas Production","field":"Engineering","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Joint Genome Institute; Office of Science; U.S. Environmental Protection Agency; U.S. Department of Energy","keywords":"Metagenomics; Stable-isotope probing; Methanogenesis; Biology; Genome; Butyrate; Bacteria; Genetics; Gene; Microorganism; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003934015,0.0004589317,0.0004305553,0.0008560989,0.0002460165,0.0007262788,0.0002667562,0.0004452969,0.0002876807],"category_scores_gemma":[0.0003141297,0.0002823015,0.0005540237,0.0007590001,0.0001953781,0.0003742918,0.0004433484,0.0004296633,0.0001642871],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002690894,"about_ca_system_score_gemma":0.0003528856,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001227057,"about_ca_topic_score_gemma":0.001949234,"domain_scores_codex":[0.9997903,0.00003115887,0.00001474574,0.00006987611,0.0000568209,0.00003710604],"domain_scores_gemma":[0.9998707,0.00002604237,0.00003564753,0.00001904043,0.00003341777,0.00001524881],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001107548,0.00002168523,0.005623052,0.00006023134,0.00003812331,0.00003211101,0.00005582566,0.000628873,0.9890766,0.00008735097,0.00002559324,0.004239916],"study_design_scores_gemma":[0.00003985013,0.0005301588,0.2121977,0.00007009647,0.0003683505,0.0003724387,0.0008285959,0.05975199,0.7189694,0.001242114,0.00557059,0.00005870054],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9790703,0.0009563521,0.0168327,0.00008492982,0.00001700631,0.0000639783,0.002217751,0.0001223476,0.0006345742],"genre_scores_gemma":[0.9568027,0.0008056444,0.03722496,0.0001301426,0.00001300376,0.00009210171,0.004209255,0.00005917388,0.0006629503],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001227057,"threshold_uncertainty_score":0.002439857,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03169257900397936,"score_gpt":0.2340814361279174,"score_spread":0.202388857123938,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}