{"id":"W2917111620","doi":"10.1128/jb.184.8.2173-2180.2002","title":"Functional and Mutational Analysis of Conjugative Transfer Region 1 (Tra1) from the IncHI1 Plasmid R27","year":2002,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; ORFS; Genetics; Complementation; Plasmid; Open reading frame; Nucleic acid sequence; Gene; Leucine zipper; Mutant; Peptide sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002072065,0.0007910097,0.0003138423,0.0006485404,0.000223884,0.0002601577,0.0006496107,0.0003256621,0.00172572],"category_scores_gemma":[0.0002758074,0.0002213999,0.0005659159,0.0004348806,0.0002656892,0.0001404316,0.0003018988,0.000928361,0.001601467],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005852337,"about_ca_system_score_gemma":0.000377397,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001723613,"about_ca_topic_score_gemma":0.001370087,"domain_scores_codex":[0.9998296,0.00002469405,0.00001163287,0.00002344963,0.00006733246,0.00004318806],"domain_scores_gemma":[0.9996889,0.00008765119,0.00008228007,0.00004549509,0.0000419194,0.00005389183],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006565214,0.00006459837,0.000300277,0.00004365083,0.000008962691,0.0001300398,0.00002012859,0.0001466079,0.9978569,0.00008034537,0.00003865023,0.001244236],"study_design_scores_gemma":[0.00002140493,0.0001738623,0.008552338,0.000009849662,0.00003339701,0.0007617056,0.00006569539,0.0009662152,0.9869245,0.00004038342,0.002435374,0.00001516673],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927079,0.000592629,0.003253984,0.00009340918,0.00001588037,0.00005028524,0.001489209,0.00007678934,0.00171995],"genre_scores_gemma":[0.9806241,0.0007834341,0.004582297,0.00006985676,0.0000135318,0.00007621232,0.008703628,0.0001968598,0.004950014],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00172572,"threshold_uncertainty_score":0.005773127,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01559965982751735,"score_gpt":0.2100325106749489,"score_spread":0.1944328508474316,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}