{"id":"W2917431650","doi":"10.1093/nar/gkm1001","title":"The BioGRID Interaction Database: 2008 update","year":2007,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":701,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Mount Sinai Hospital; Lunenfeld-Tanenbaum Research Institute","funders":"Canadian Institutes of Health Research; National Institutes of Health; National Center for Research Resources; Cancer Research UK; Wellcome Trust","keywords":"Biology; Budding yeast; Schizosaccharomyces pombe; Schizosaccharomyces; Database; Visualization; Computational biology; Saccharomyces cerevisiae; Gene interaction; Bioinformatics; Yeast; Genetics; Gene; Computer science; Data mining","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002590643,0.00009646411,0.0000671996,0.0000681612,0.0004862094,0.0001047907,0.0004310325,0.0001281461,0.0000615454],"category_scores_gemma":[0.0001035547,0.00006860789,0.00005440725,0.0002115849,0.0002377572,0.000007907768,0.0003788159,0.0003899524,0.0002729149],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002874832,"about_ca_system_score_gemma":0.00005733287,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002490746,"about_ca_topic_score_gemma":0.0001220389,"domain_scores_codex":[0.9986286,0.00006826175,0.0002303393,0.0002080343,0.0003063734,0.0005583883],"domain_scores_gemma":[0.9990245,0.00006180272,0.00004534946,0.0005768387,0.0001723006,0.0001192322],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0006566907,0.00008714456,0.000906344,0.00002557931,0.0001183596,0.00001374303,0.0001215518,0.00002397325,0.2250881,0.002983994,0.5328154,0.2371591],"study_design_scores_gemma":[0.0002228403,0.0001236735,0.0007639188,0.000008863,0.000002639035,0.00001962846,0.0003476491,0.0006192746,0.02312091,0.0002091777,0.9744558,0.0001056745],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8888578,0.005790488,0.02990333,0.003989572,0.001809392,0.0009942439,0.00008685835,0.00005824482,0.06851007],"genre_scores_gemma":[0.9937185,0.002033886,0.0009862161,0.0002745265,0.0008087641,0.00001066208,0.0002006952,0.00002416224,0.001942592],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4416403,"threshold_uncertainty_score":0.3739579,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02915517991538183,"score_gpt":0.3427645825477472,"score_spread":0.3136094026323654,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}