{"id":"W2917960332","doi":"10.1101/556910","title":"Positive selection in the Ebola virus proteome","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Viral Infections and Outbreaks Research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Cegep Edouard Montpetit","funders":"FAS Division of Science, Harvard University; Harvard University","keywords":"Ebola virus; Biology; Nucleoprotein; Outbreak; Virology; Ebolavirus; Phylogenetic tree; Virus; Phylogenetics; Filoviridae; Genome; Gene; Proteome; VP40; Host (biology); Genetics; Viral disease","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002211822,0.0001521849,0.0001312699,0.0004134022,0.0003976069,0.0004464454,0.0001478152,0.0002262242,0.0006744749],"category_scores_gemma":[0.0003664784,0.0001059758,0.0001561831,0.0003079746,0.0002433321,0.0003413717,0.0003327457,0.0002695054,0.0002094754],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001995738,"about_ca_system_score_gemma":0.0001290574,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005647108,"about_ca_topic_score_gemma":0.0007192221,"domain_scores_codex":[0.9998816,0.00002134058,0.00000394417,0.00003702989,0.00003200656,0.00002403579],"domain_scores_gemma":[0.9998142,0.000035012,0.00007125097,0.00001402116,0.00003656538,0.00002889654],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001697993,0.0000277134,0.0511478,0.00005396831,0.0000483245,0.0003560618,0.0001926346,0.0004008164,0.941034,0.0003685518,0.0002354491,0.005964884],"study_design_scores_gemma":[0.00002047494,0.0002190169,0.8303469,0.00003811537,0.00008745296,0.002093909,0.0007818358,0.006571112,0.1502632,0.0008194284,0.008729938,0.00002854764],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982784,0.0004734244,0.000359999,0.00005277772,0.00000527297,0.000002346698,0.0001326839,0.00000958013,0.0006855683],"genre_scores_gemma":[0.9986842,0.0001603969,0.0004555843,0.00004214675,0.000006226407,0.000003746656,0.0002942033,0.000006554713,0.0003468629],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006744749,"threshold_uncertainty_score":0.002256393,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01900199310771228,"score_gpt":0.2742511293349522,"score_spread":0.2552491362272399,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}