{"id":"W2920080907","doi":"10.1093/jac/dkz054","title":"Genome-based epidemiology and antimicrobial resistance determinants of Neisseria gonorrhoeae isolates with decreased susceptibility and resistance to extended-spectrum cephalosporins in Argentina in 2011–16","year":2019,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; Toronto Public Health","funders":"Fondation pour la Recherche Médicale","keywords":"Neisseria gonorrhoeae; Biology; Microbiology; Antibiotic resistance; Cephalosporin; Ceftriaxone; Azithromycin; Molecular epidemiology; Multilocus sequence typing; Cefixime; Antimicrobial; MTRR; Virology; Genotype; Genetics; Antibiotics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003146776,0.0002596836,0.0002615915,0.0005937248,0.0002138058,0.0003595563,0.0001669827,0.0002171231,0.0006855279],"category_scores_gemma":[0.000566221,0.0001782084,0.0002009584,0.0007545815,0.000164364,0.0001596211,0.0002029928,0.0002230541,0.00008069746],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007765272,"about_ca_system_score_gemma":0.000472882,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.05776614,"about_ca_topic_score_gemma":0.05569242,"domain_scores_codex":[0.9997606,0.00004428349,0.00002141514,0.00007194051,0.00004259355,0.00005919804],"domain_scores_gemma":[0.9995491,0.00003164641,0.0002426629,0.00001768588,0.0000972354,0.00006154942],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001923413,0.00002887673,0.9903453,0.00004430825,0.00003956594,0.0002280886,0.0002672056,0.0001087475,0.004545025,0.00003341059,0.0002219285,0.003945286],"study_design_scores_gemma":[0.000002661256,0.00002795028,0.9993017,0.000007159378,0.000006996139,0.000140684,0.0001088797,0.00005845307,0.00005638375,0.000003340045,0.000284816,9.858609e-7],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974592,0.0003636559,0.0001401187,0.00005074428,0.000004010925,0.00001673931,0.001423971,0.000004667652,0.0005368589],"genre_scores_gemma":[0.9967757,0.0004172637,0.0003737491,0.00002581203,0.00000604593,0.0000156588,0.002165563,0.000002384606,0.0002178572],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05776614,"threshold_uncertainty_score":0.1148598,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01242652017024663,"score_gpt":0.2783208279914481,"score_spread":0.2658943078212015,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}