{"id":"W2920323856","doi":"10.1128/msystems.00098-18","title":"Comprehensive Virulence Gene Profiling of Bovine Non- <i>aureus</i> Staphylococci Based on Whole-Genome Sequencing Data","year":2019,"lang":"en","type":"article","venue":"mSystems","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; University of Calgary","funders":"Alberta Livestock and Meat Agency; University of Calgary","keywords":"Biology; Mastitis; Gene; Virulence; Immune system; Genome; Microbiology; Genetics; Computational biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003102349,0.0002809037,0.000330091,0.0009334228,0.0002385699,0.000463496,0.0001296907,0.0002335528,0.0004427687],"category_scores_gemma":[0.0003592281,0.00009645229,0.0004091874,0.0008051521,0.0001374794,0.0001680143,0.0002643321,0.0002652,0.0002317907],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002347742,"about_ca_system_score_gemma":0.0002955034,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002796046,"about_ca_topic_score_gemma":0.00514225,"domain_scores_codex":[0.9997452,0.00003583823,0.00002210314,0.00007538875,0.00007212433,0.00004937448],"domain_scores_gemma":[0.9996883,0.00006315088,0.0001108592,0.00002123965,0.00006024474,0.00005624211],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001763769,0.00004244857,0.03626729,0.000105763,0.00005030313,0.00008988523,0.0001274743,0.0002843641,0.9554338,0.00005220537,0.0001382927,0.007231683],"study_design_scores_gemma":[0.00001008234,0.0003151619,0.9063742,0.00004269672,0.0001192683,0.000557897,0.0003449296,0.003490482,0.08442955,0.0001351484,0.004158874,0.00002180122],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9912981,0.0007774011,0.002197259,0.00004351733,0.000005401399,0.0000177812,0.005140692,0.00004095012,0.0004788698],"genre_scores_gemma":[0.9670903,0.0006490597,0.01047278,0.000106136,0.00000730393,0.00003416198,0.02091498,0.00003944914,0.0006858549],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002796046,"threshold_uncertainty_score":0.005559564,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0569761810701602,"score_gpt":0.2510210891768459,"score_spread":0.1940449081066857,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}