{"id":"W2920323856","doi":"10.1128/msystems.00098-18","title":"Comprehensive Virulence Gene Profiling of Bovine Non- <i>aureus</i> Staphylococci Based on Whole-Genome Sequencing Data","year":2019,"lang":"en","type":"article","venue":"mSystems","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; University of Calgary","funders":"Alberta Livestock and Meat Agency; University of Calgary","keywords":"Biology; Mastitis; Gene; Virulence; Immune system; Genome; Microbiology; Genetics; Computational biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004794479,0.0001844038,0.0003591234,0.00002000899,0.00009168006,0.00004027486,0.0008458195,0.0001022828,0.0001583131],"category_scores_gemma":[0.00003933408,0.00008194897,0.00006888332,0.0002834962,0.00005206181,0.0001318239,0.0002234934,0.0001498834,0.000181215],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004527698,"about_ca_system_score_gemma":0.00003373761,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006150837,"about_ca_topic_score_gemma":0.0001109688,"domain_scores_codex":[0.9982253,0.000153915,0.000419734,0.0005236399,0.0003858409,0.0002915509],"domain_scores_gemma":[0.9988805,0.000258544,0.0002264123,0.0004409127,0.0001091213,0.00008452636],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004965486,0.00004181208,0.00248234,0.0001644881,0.00001072433,0.000006079206,0.00004609953,0.0007631607,0.9956347,0.0001332242,0.0002377991,0.0004299317],"study_design_scores_gemma":[0.003135352,0.005835311,0.06039788,0.002510339,0.0001063423,0.00004021417,0.006125056,0.1079707,0.3841544,0.0002721448,0.4265885,0.002863768],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938665,0.0001868617,0.0001453937,0.0001591004,0.0004009091,0.0007652508,0.001863997,0.00005285952,0.002559108],"genre_scores_gemma":[0.9976152,0.00001017222,0.000393395,0.0004173389,0.0002747959,0.00001162727,0.001019855,0.000002164786,0.0002554858],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6114803,"threshold_uncertainty_score":0.3341782,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0569761810701602,"score_gpt":0.2510210891768459,"score_spread":0.1940449081066857,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}