{"id":"W2920808234","doi":"10.1016/j.diagmicrobio.2019.03.005","title":"Legionella co-infection in HIV-associated pneumonia","year":2019,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":false,"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"Centers for Disease Control and Prevention; European Commission; University of Manitoba","keywords":"Legionella; Legionella pneumophila; Medicine; Pneumocystis jirovecii; Pneumonia; Tuberculosis; Bronchoalveolar lavage; Pneumocystis carinii; Legionnaires' disease; AIDS-Related Opportunistic Infections; Microbiology; Mycobacterium tuberculosis; Virology; Human immunodeficiency virus (HIV); Immunology; Internal medicine; Sida; Viral disease; Bacteria; Biology; Lung; Pathology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007288053,0.0004749059,0.0004554385,0.001361093,0.001414329,0.001257887,0.0003607645,0.001297304,0.005606276],"category_scores_gemma":[0.002808131,0.0003604321,0.0002921442,0.001070657,0.0006187898,0.0008367244,0.0009320772,0.001067604,0.0004305277],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00056616,"about_ca_system_score_gemma":0.0008846429,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005820225,"about_ca_topic_score_gemma":0.006349199,"domain_scores_codex":[0.9991735,0.0002859704,0.0001118378,0.00008971491,0.0001057971,0.0002331528],"domain_scores_gemma":[0.998189,0.0007129361,0.0003999462,0.00006888767,0.0001615234,0.0004677058],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001296396,0.0001762292,0.9759617,0.00006410653,0.00006328086,0.0163493,0.0002556698,0.00008458366,0.0007759872,0.0001749807,0.0003129848,0.004484579],"study_design_scores_gemma":[0.00005571856,0.0005132435,0.9637153,0.000112425,0.0001409679,0.03090615,0.001744577,0.0008220726,0.0003814451,0.0004141242,0.00117196,0.00002206087],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9887617,0.005677514,0.0001264661,0.0003793891,0.00009080787,0.00002245497,0.000152623,0.00001181833,0.004777302],"genre_scores_gemma":[0.9984096,0.0007128128,0.00005854654,0.0000952004,0.0001408286,0.000007855479,0.00008595695,0.000001807861,0.0004875553],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005820225,"threshold_uncertainty_score":0.01875484,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004924848368379421,"score_gpt":0.2384289839651431,"score_spread":0.2335041355967637,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}