{"id":"W2920808234","doi":"10.1016/j.diagmicrobio.2019.03.005","title":"Legionella co-infection in HIV-associated pneumonia","year":2019,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":false,"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"Centers for Disease Control and Prevention; European Commission; University of Manitoba","keywords":"Legionella; Legionella pneumophila; Medicine; Pneumocystis jirovecii; Pneumonia; Tuberculosis; Bronchoalveolar lavage; Pneumocystis carinii; Legionnaires' disease; AIDS-Related Opportunistic Infections; Microbiology; Mycobacterium tuberculosis; Virology; Human immunodeficiency virus (HIV); Immunology; Internal medicine; Sida; Viral disease; Bacteria; Biology; Lung; Pathology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001777071,0.0001750153,0.0001798804,0.0001119129,0.00008980822,0.00002288559,0.00007606611,0.0001874239,0.00006201724],"category_scores_gemma":[0.0004479802,0.0001693004,0.0000706643,0.0001203615,0.0001402147,0.000007578247,0.00007869622,0.0001913981,0.0001795291],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003241533,"about_ca_system_score_gemma":0.0001024443,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009778012,"about_ca_topic_score_gemma":0.0001664354,"domain_scores_codex":[0.998834,0.0001496648,0.0001855818,0.0004399653,0.00003893183,0.0003518479],"domain_scores_gemma":[0.9994104,0.0001238658,0.00005808343,0.0002131172,0.00005028346,0.0001442724],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00007565841,0.0002019088,0.8640071,0.00002691288,0.00003269667,0.00001936847,0.00001777991,0.00005404084,0.1331479,0.0001008069,0.002080429,0.0002354326],"study_design_scores_gemma":[0.002425635,0.0004444791,0.966059,0.00006386446,0.00003028678,0.00004800213,0.00001114994,0.00006227782,0.008819692,0.0002505665,0.02136398,0.0004210139],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969229,0.000669382,0.00002690084,0.0001695749,0.000213657,0.0003789169,0.00006027278,0.00002443191,0.001534004],"genre_scores_gemma":[0.9966583,0.001486862,0.000001933663,0.000452624,0.00008048566,0.00004200215,0.0006665493,0.00001852562,0.0005926823],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1243282,"threshold_uncertainty_score":0.6903868,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004924848368379421,"score_gpt":0.2384289839651431,"score_spread":0.2335041355967637,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}