{"id":"W2920917760","doi":"10.1016/j.meegid.2019.02.032","title":"Genomic characterization of hepatitis C virus transmitted founder variants with deep sequencing","year":2019,"lang":"en","type":"article","venue":"Infection Genetics and Evolution","topic":"Hepatitis C virus research","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université de Montréal","funders":"National Institute on Drug Abuse; Medical Research Council; National Institutes of Health; National Institute of Allergy and Infectious Diseases; Rijksinstituut voor Volksgezondheid en Milieu; National Health and Medical Research Council; Department of Health, State Government of Victoria; Canadian Institutes of Health Research; University of New South Wales","keywords":"Biology; Deep sequencing; Viral quasispecies; Haplotype; Virology; Genetics; Genome; Virus; Hepatitis C virus; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004293097,0.0003201188,0.0003840765,0.0008427901,0.000379397,0.0007208625,0.0003324397,0.0005202717,0.001789701],"category_scores_gemma":[0.001100825,0.0002468454,0.0004845331,0.0006585722,0.0002568156,0.0001889305,0.0004974773,0.0009534708,0.0004813314],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003177635,"about_ca_system_score_gemma":0.0003200657,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00252568,"about_ca_topic_score_gemma":0.006362925,"domain_scores_codex":[0.9997666,0.00002620672,0.00001675181,0.0000837676,0.00005887899,0.0000477282],"domain_scores_gemma":[0.9995384,0.0001583108,0.00008223428,0.00006804853,0.00007993294,0.00007308226],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007002662,0.0001213692,0.1141043,0.0002670717,0.0004927021,0.0015049,0.0005959337,0.00361507,0.8046142,0.002759043,0.002270687,0.06895436],"study_design_scores_gemma":[0.0001868555,0.0006350836,0.6554037,0.0002476049,0.001125773,0.009359179,0.0008603365,0.05055002,0.2093168,0.009148558,0.06299586,0.0001702142],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9587031,0.001185293,0.02677895,0.0003108085,0.0000736968,0.00008299961,0.009474846,0.0002506758,0.003139707],"genre_scores_gemma":[0.9669638,0.0004725369,0.02234763,0.0004083329,0.00003472391,0.00004739552,0.007633374,0.0001629158,0.00192939],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00252568,"threshold_uncertainty_score":0.005987108,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01514225776251646,"score_gpt":0.2494557108237604,"score_spread":0.2343134530612439,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}