{"id":"W2920934181","doi":"10.1080/19490976.2019.1586037","title":"The success of fecal microbial transplantation in <i>Clostridium difficile</i> infection correlates with bacteriophage relative abundance in the donor: a retrospective cohort study","year":2019,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity; University of Alberta","funders":"University of Alberta; Canadian Institutes of Health Research; Health Canada; Alberta Innovates - Health Solutions","keywords":"Clostridium difficile; Metagenomics; Biology; Bacteriophage; Microbiology; Gammaproteobacteria; Transplantation; Feces; UniFrac; Microbiome; Internal medicine; Escherichia coli; Medicine; Bacteria; Antibiotics; Bioinformatics; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001271021,0.0002017626,0.0003008939,0.0004352456,0.0005358347,0.000802191,0.0002960883,0.0003313702,0.001551122],"category_scores_gemma":[0.002877255,0.0002182506,0.0004676551,0.0007474768,0.0003709205,0.0004521426,0.0003716987,0.0006412016,0.0002554781],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002189206,"about_ca_system_score_gemma":0.0002637131,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00162414,"about_ca_topic_score_gemma":0.001864489,"domain_scores_codex":[0.9994015,0.000129105,0.00007652597,0.0001709726,0.00009522194,0.0001267561],"domain_scores_gemma":[0.9977457,0.0003012945,0.001118875,0.0003657385,0.0001577861,0.0003105495],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001540633,0.00001425273,0.9983035,0.000009191027,0.00005473538,0.0000602481,0.00004091757,0.0000169962,0.0003878471,0.00001487312,0.00006247377,0.0008807543],"study_design_scores_gemma":[0.000006851766,0.0002318923,0.9979522,0.00001501006,0.00007612856,0.0008882693,0.0001569409,0.0001128823,0.0002557526,0.0000249788,0.0002717184,0.00000744356],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991811,0.0002158192,0.0001708089,0.00001771378,0.000007488241,0.000004610838,0.0001553161,0.000003172554,0.0002439863],"genre_scores_gemma":[0.9996333,0.00007655161,0.00006983444,0.0000200833,0.000007453504,0.000003251919,0.0001231175,0.00000326426,0.00006305135],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00162414,"threshold_uncertainty_score":0.006721914,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006524558919011386,"score_gpt":0.2506520259782432,"score_spread":0.2441274670592318,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}