{"id":"W2920934181","doi":"10.1080/19490976.2019.1586037","title":"The success of fecal microbial transplantation in <i>Clostridium difficile</i> infection correlates with bacteriophage relative abundance in the donor: a retrospective cohort study","year":2019,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity; University of Alberta","funders":"University of Alberta; Canadian Institutes of Health Research; Health Canada; Alberta Innovates - Health Solutions","keywords":"Clostridium difficile; Metagenomics; Biology; Bacteriophage; Microbiology; Gammaproteobacteria; Transplantation; Feces; UniFrac; Microbiome; Internal medicine; Escherichia coli; Medicine; Bacteria; Antibiotics; Bioinformatics; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009322761,0.0002855418,0.0005425373,0.0002174707,0.0001493431,0.00007280747,0.0002489025,0.0001401881,0.00005632147],"category_scores_gemma":[0.00007660784,0.0001698214,0.0001097013,0.001012486,0.0002415439,0.0001820991,0.00004620407,0.0008769398,0.00003469075],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003772026,"about_ca_system_score_gemma":0.0001940223,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00266443,"about_ca_topic_score_gemma":0.005902549,"domain_scores_codex":[0.9976049,0.0003367274,0.0005922759,0.0005000276,0.0005083823,0.000457661],"domain_scores_gemma":[0.9986266,0.000455392,0.0001948279,0.0004784574,0.0001963586,0.00004835392],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00200698,0.0008691574,0.8080982,0.00009385396,0.00008943285,0.00007165779,0.003167905,0.00004939317,0.1853175,0.00004208479,0.0000616056,0.0001321748],"study_design_scores_gemma":[0.004372049,0.0014484,0.9190239,0.000299272,0.0001196399,0.0001173779,0.001117777,0.00005250557,0.07314728,0.000009679073,0.0001101279,0.0001820447],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949024,0.0002465752,0.00001346333,0.0003656168,0.0001661943,0.003277017,0.00004828981,0.00002349399,0.0009569671],"genre_scores_gemma":[0.9987987,0.0006008564,0.00001238559,0.00003431512,0.0000641026,0.0001127489,0.00005774991,0.00003034741,0.0002887754],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1121703,"threshold_uncertainty_score":0.6925117,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006524558919011386,"score_gpt":0.2506520259782432,"score_spread":0.2441274670592318,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}