{"id":"W2921108547","doi":"10.1038/s41559-019-0834-1","title":"Megaphylogeny resolves global patterns of mushroom evolution","year":2019,"lang":"en","type":"article","venue":"Nature Ecology & Evolution","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":300,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Northern Research Station; Department of Microbiology, Faculty of Science, Chulalongkorn University; Russian Academy of Sciences; Sorbonne Université; Instytut Botaniki im. W. Szafera Polskiej Akademii Nauk; Tartu Ülikool; Suomen Ympäristökeskus; Mendelova Univerzita v Brně; Joint Genome Institute; Szent István Egyetem; U.S. Forest Service; Muséum National d'Histoire Naturelle; Centre National de la Recherche Scientifique; Department of Biology, San Francisco State University; Universitetet i Oslo; Naturalis Biodiversity Center; Helsingin Yliopisto; Magyar Tudományos Akadémia; Institut National de la Recherche Agronomique; University of Toronto; Universidad de Buenos Aires; Eötvös Loránd Tudományegyetem; U.S. Department of Energy; Universiteit Utrecht; Szegedi Tudományegyetem; San Francisco State University; Consejo Nacional de Investigaciones Científicas y Técnicas","keywords":"Agaricomycetes; Biology; Mushroom; Adaptive radiation; Clade; Phylogenetics; Lineage (genetic); Ecology; Ecological niche; Decomposer; Evolutionary biology; Botany; Ecosystem; Basidiomycota","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007030489,0.000318072,0.0005859436,0.001801464,0.0009081837,0.001158658,0.0003560435,0.0006542348,0.002438834],"category_scores_gemma":[0.00155697,0.0003587609,0.0004853378,0.001567058,0.0004745817,0.0008428234,0.001522398,0.0008390837,0.0007843165],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002666555,"about_ca_system_score_gemma":0.0002205635,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009875802,"about_ca_topic_score_gemma":0.002606623,"domain_scores_codex":[0.9995461,0.00008322864,0.00002655192,0.0002287639,0.00004253433,0.00007278845],"domain_scores_gemma":[0.9989766,0.0003202204,0.00031594,0.0001282798,0.00009407382,0.0001648956],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001038432,0.0001019911,0.7544664,0.0004474361,0.001115332,0.0008190243,0.003093655,0.003475364,0.1857813,0.002712382,0.001920654,0.04502808],"study_design_scores_gemma":[0.00001758752,0.00006246421,0.9865803,0.00004015607,0.0002054759,0.0005140692,0.0006334731,0.00465141,0.001450333,0.001259258,0.004563236,0.00002235828],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940222,0.001226248,0.002293967,0.00008929512,0.000009284006,0.00000636107,0.0009300844,0.0001165338,0.001306078],"genre_scores_gemma":[0.9954921,0.0003634964,0.001756602,0.00007074878,0.00001292719,0.00001037056,0.00203459,0.00006401295,0.0001951355],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002438834,"threshold_uncertainty_score":0.008158743,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003120601640026724,"score_gpt":0.2000661914809485,"score_spread":0.1969455898409218,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}