{"id":"W2921128131","doi":"10.1111/1751-7915.13388","title":"Dismantling the bacterial virulence program","year":2019,"lang":"en","type":"article","venue":"Microbial Biotechnology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Killam Trusts; Michael Smith Health Research BC; Cystic Fibrosis Canada","keywords":"Virulence; Effector; Antibiotic resistance; Biofilm; Antibiotics; Biology; Phenotype; Microbiology; Bacteria; Computational biology; Genetics; Gene; Cell biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001108466,0.000170545,0.000152527,0.00003780428,0.000114467,0.00005246809,0.0003574607,0.0004827453,0.00007213886],"category_scores_gemma":[0.00003502965,0.000124824,0.0000898155,0.0001171573,0.0002228222,0.000003515037,0.0002940168,0.0001879735,0.000190743],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001218149,"about_ca_system_score_gemma":0.00004221467,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003805815,"about_ca_topic_score_gemma":0.00004165493,"domain_scores_codex":[0.9988724,0.00003999635,0.0001874954,0.0004087801,0.00004870308,0.0004426069],"domain_scores_gemma":[0.9993098,0.000006630969,0.00008002608,0.0005393261,0.00002924395,0.00003491222],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000805757,0.0000333501,0.0001157158,0.000005754879,0.00002091735,0.000001485522,0.000009474108,0.000001216561,0.9766172,0.00029029,0.0006857166,0.02213833],"study_design_scores_gemma":[0.0002358786,0.0002208901,0.000175776,0.00000722945,0.000006144496,0.00003934153,0.00001794707,0.000006526329,0.6452459,0.00000594654,0.3539127,0.0001257137],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962722,0.0001289201,0.00003518399,0.001586459,0.001121994,0.0004333556,0.00001840563,0.00009608692,0.0003074019],"genre_scores_gemma":[0.9973859,0.0001380742,0.001274511,0.0003511774,0.0004044405,0.000009051066,0.00009370067,0.00002463118,0.00031856],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.353227,"threshold_uncertainty_score":0.5090175,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00466075544097194,"score_gpt":0.2122318674953851,"score_spread":0.2075711120544132,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}