{"id":"W2921476316","doi":"10.1128/aac.00243-19","title":"Genomic and Functional Analysis of Emerging Virulent and Multidrug-Resistant <i>Escherichia coli</i> Lineage Sequence Type 648","year":2019,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":105,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Deutsche Forschungsgemeinschaft; Wellcome Trust","keywords":"Biology; Virulence; Lineage (genetic); Multiple drug resistance; Escherichia coli; Sequence (biology); Genetics; Microbiology; Sequence analysis; Drug resistance; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001285709,0.0001576693,0.0002615898,0.00006511968,0.00008475581,0.0000271466,0.00006588196,0.00007554697,0.00004381412],"category_scores_gemma":[0.00001067783,0.0001418393,0.00006110753,0.0001866908,0.0001454727,0.000006641983,0.0001222567,0.00006997072,0.000001237789],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008473848,"about_ca_system_score_gemma":0.00003286791,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008376263,"about_ca_topic_score_gemma":0.00003731706,"domain_scores_codex":[0.999137,0.00003389601,0.0001827084,0.0003579656,0.00009583367,0.0001925382],"domain_scores_gemma":[0.9995969,0.00001369992,0.00008399697,0.0001638778,0.00007798403,0.0000635288],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000262615,0.0000472187,0.07466462,0.00004677308,0.0007132123,9.235423e-7,0.0001234289,0.00003083579,0.9229814,0.00001181368,0.000668596,0.0004485722],"study_design_scores_gemma":[0.002056999,0.0003746562,0.7782363,0.00003499986,0.0002568574,0.000003386172,0.0001548032,0.002850385,0.1786966,0.000004876882,0.03691171,0.0004184707],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989001,0.0004154906,0.00005334342,0.0002540033,0.00005180716,0.0001806237,0.00004237379,0.000005550859,0.00009668838],"genre_scores_gemma":[0.9896136,0.007883493,0.00050298,0.001433812,0.00004362196,0.000003214487,0.00005182025,0.00001731855,0.0004501439],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7442848,"threshold_uncertainty_score":0.578404,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01475507696471725,"score_gpt":0.2669089636863614,"score_spread":0.2521538867216441,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}