{"id":"W2921476316","doi":"10.1128/aac.00243-19","title":"Genomic and Functional Analysis of Emerging Virulent and Multidrug-Resistant <i>Escherichia coli</i> Lineage Sequence Type 648","year":2019,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":105,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Deutsche Forschungsgemeinschaft; Wellcome Trust","keywords":"Biology; Virulence; Lineage (genetic); Multiple drug resistance; Escherichia coli; Sequence (biology); Genetics; Microbiology; Sequence analysis; Drug resistance; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001161496,0.0002236088,0.0001392444,0.0004382018,0.0001029219,0.000175339,0.0001134639,0.0002022362,0.0009707494],"category_scores_gemma":[0.0003347547,0.00007998421,0.0003093221,0.0004605817,0.0001159928,0.00008392574,0.0001702494,0.0002203699,0.0003597912],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001325769,"about_ca_system_score_gemma":0.0001643349,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001383121,"about_ca_topic_score_gemma":0.001147441,"domain_scores_codex":[0.9999136,0.00001616551,0.000009446855,0.00001821957,0.00002267233,0.00001999407],"domain_scores_gemma":[0.9998281,0.00004539654,0.0000517597,0.0000153587,0.00003381833,0.00002549995],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001172996,0.00005747416,0.009852326,0.00003469308,0.00001223332,0.0001319167,0.00006141019,0.0001730873,0.9859005,0.00009930786,0.0000473402,0.003512429],"study_design_scores_gemma":[0.00002949737,0.001233906,0.5715309,0.00003116494,0.0001418212,0.002544567,0.0005908917,0.006485221,0.4114898,0.0004106264,0.00547739,0.00003411881],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962785,0.00007016087,0.001576186,0.00002718955,0.000004058166,0.00002042102,0.001399048,0.0000174358,0.0006070973],"genre_scores_gemma":[0.9926599,0.00008837786,0.003308533,0.00003322204,0.000003110413,0.00002587473,0.002875087,0.00001528682,0.0009907214],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001383121,"threshold_uncertainty_score":0.003247499,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01475507696471725,"score_gpt":0.2669089636863614,"score_spread":0.2521538867216441,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}