{"id":"W2921502906","doi":"10.1007/s13258-019-00794-x","title":"A comprehensive analysis of the Baboon-specific full-length LINE-1 retrotransposons","year":2019,"lang":"en","type":"article","venue":"Genes & Genomics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Brock University","funders":"","keywords":"Baboon; Retrotransposon; Biology; Alu element; Genome; Human genome; Genetics; Gene; Evolutionary biology; Transposable element","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005094949,0.0001092877,0.0002231341,0.00001751152,0.0001174218,0.00001935634,0.0003341465,0.00007049946,0.0006760419],"category_scores_gemma":[0.00000220609,0.00003945976,0.0002956081,0.0007903907,0.00004399491,0.00001970656,0.00006949699,0.00006728652,0.00005281173],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002072074,"about_ca_system_score_gemma":0.00001201692,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006541927,"about_ca_topic_score_gemma":0.000587625,"domain_scores_codex":[0.9991851,0.00004759574,0.0002242872,0.0002330093,0.000138447,0.0001715818],"domain_scores_gemma":[0.9995098,0.00009411666,0.000104114,0.0001566789,0.00009002251,0.00004525487],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001879933,0.00004110681,0.02371489,0.000003510184,0.0001830798,2.334529e-7,0.0001858969,0.003406071,0.9464636,0.0003529417,0.00002917052,0.02560069],"study_design_scores_gemma":[0.0001277242,0.0001217114,0.7086145,0.000004970248,0.0002264262,0.000002120366,0.0003031565,0.001135696,0.009681241,0.0002351656,0.2793852,0.0001620978],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997258,0.001091321,0.000009586893,0.0006425784,0.000215946,0.0002187369,0.0002692786,0.00001505355,0.0002794794],"genre_scores_gemma":[0.9987224,0.0005016124,0.0002165051,0.0001271711,0.0001327684,0.000005323335,0.00007268559,0.000001047842,0.000220424],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9367824,"threshold_uncertainty_score":0.7402185,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02091845611412191,"score_gpt":0.2042409347434487,"score_spread":0.1833224786293268,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}