{"id":"W2921650138","doi":"10.1038/s41587-019-0055-9","title":"The International Cancer Genome Consortium Data Portal","year":2019,"lang":"en","type":"letter","venue":"Nature Biotechnology","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":674,"is_retracted":false,"has_abstract":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Ontario Institute for Cancer Research","funders":"","keywords":"Genome; Cancer; Computational biology; Biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0001537798,0.0003020388,0.0002392701,0.00008400661,0.0001030547,0.00007592533,0.003169666,0.005357824,0.00007173023],"category_scores_gemma":[0.0003671526,0.0002376032,0.00009919837,0.00007852826,0.0002866585,0.000002492874,0.001821791,0.002897886,0.00004731227],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005402735,"about_ca_system_score_gemma":0.0004605569,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004383063,"about_ca_topic_score_gemma":0.0003072773,"domain_scores_codex":[0.998118,0.00001990698,0.000273133,0.0009414354,0.0002259451,0.0004216174],"domain_scores_gemma":[0.997144,0.00007003482,0.0002582869,0.002382854,0.0001222108,0.00002262156],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002323328,0.000007644918,0.00006539265,0.00001165138,0.0002686635,0.00005431023,0.00000101899,0.000002976754,0.01877339,0.0002180708,0.9788401,0.001733613],"study_design_scores_gemma":[0.0002294125,0.00005686939,0.00004558815,0.000009250521,0.00004960239,0.00006408222,0.000006298289,0.00001789376,0.006115065,0.00006665814,0.9930431,0.000296155],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"commentary","genre_scores_codex":[0.001515796,0.03841207,0.00005727687,0.945197,0.008148649,0.0003811606,0.004358402,0.00004431961,0.001885324],"genre_scores_gemma":[0.009777007,0.04779455,0.0002789149,0.8938442,0.01676759,0.00007534042,0.02154829,0.0001419281,0.009772203],"genre_candidate":"commentary","genre_consensus":"commentary","teacher_disagreement_score":0.05135283,"threshold_uncertainty_score":0.9994025,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00987729893515375,"score_gpt":0.2666473678701261,"score_spread":0.2567700689349723,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}