{"id":"W2921903877","doi":"10.1093/jcag/gwz006.003","title":"A4 INVESTIGATING MICROBIAL ENGRAFTMENT VIA A COMPREHENSIVE CULTURE-ENRICHED AND CULTURE-INDEPENDENT METAGENOMICS IN PATIENTS WITH ULCERATIVE COLITIS","year":2019,"lang":"en","type":"article","venue":"Journal of the Canadian Association of Gastroenterology","topic":"Microscopic Colitis","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. Joseph’s Healthcare Hamilton; McMaster University","funders":"","keywords":"Metagenomics; Microbiome; Human Microbiome Project; Ulcerative colitis; Computational biology; Biology; Fecal bacteriotherapy; Dysbiosis; Genome; Shotgun sequencing; Clostridium difficile; Medicine; Microbiology; Bioinformatics; Genetics; Gene; Internal medicine; Disease; Antibiotics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002876424,0.0001264322,0.0004845569,0.0001597302,0.00005256467,0.00001737727,0.0001056171,0.0001122013,0.00002711731],"category_scores_gemma":[0.0001111164,0.00009141696,0.00008110908,0.00008997484,0.00005576818,0.00006396685,0.00003275982,0.0003929922,0.000001323969],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002074925,"about_ca_system_score_gemma":0.0003463226,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003731985,"about_ca_topic_score_gemma":0.295583,"domain_scores_codex":[0.9985986,0.0002814724,0.000466424,0.0001241167,0.0002514799,0.000277956],"domain_scores_gemma":[0.9981918,0.00003264593,0.0009255257,0.0001080263,0.000541512,0.0002004336],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003808562,0.00005350462,0.9935759,0.00002541251,0.0002901501,0.000006268195,0.002202087,0.00003101457,0.002658109,0.00001443419,0.0007305247,0.00003168699],"study_design_scores_gemma":[0.007246439,0.001635796,0.9898253,0.0000986071,0.0001134279,0.00004965944,0.000174698,0.00001361105,0.0002111493,0.00004462852,0.0005390575,0.00004762329],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971202,0.00001378103,0.00001051712,0.002026837,0.0002264424,0.0005001057,0.00004137519,0.000001426906,0.00005931583],"genre_scores_gemma":[0.9968895,0.000006969571,0.0008095655,0.001896793,0.00003752532,0.000002266305,0.00001011463,0.00001001734,0.0003372801],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.291851,"threshold_uncertainty_score":0.7172707,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005269310946716816,"score_gpt":0.209927714162801,"score_spread":0.2046584032160842,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}