{"id":"W2921903877","doi":"10.1093/jcag/gwz006.003","title":"A4 INVESTIGATING MICROBIAL ENGRAFTMENT VIA A COMPREHENSIVE CULTURE-ENRICHED AND CULTURE-INDEPENDENT METAGENOMICS IN PATIENTS WITH ULCERATIVE COLITIS","year":2019,"lang":"en","type":"article","venue":"Journal of the Canadian Association of Gastroenterology","topic":"Microscopic Colitis","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. Joseph’s Healthcare Hamilton; McMaster University","funders":"","keywords":"Metagenomics; Microbiome; Human Microbiome Project; Ulcerative colitis; Computational biology; Biology; Fecal bacteriotherapy; Dysbiosis; Genome; Shotgun sequencing; Clostridium difficile; Medicine; Microbiology; Bioinformatics; Genetics; Gene; Internal medicine; Disease; Antibiotics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001163438,0.000359404,0.0009190693,0.0006949165,0.0005235338,0.0008892078,0.0002742768,0.0005547672,0.001067042],"category_scores_gemma":[0.001124965,0.0002595843,0.0009094281,0.000756542,0.0002235598,0.0003847419,0.0005273253,0.0006733904,0.0001956044],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004439089,"about_ca_system_score_gemma":0.0003812565,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008459472,"about_ca_topic_score_gemma":0.0009664651,"domain_scores_codex":[0.9993332,0.0002222153,0.00005887389,0.0001530305,0.0001357077,0.00009698642],"domain_scores_gemma":[0.9995074,0.0001003804,0.0001245626,0.00007202985,0.00008984937,0.0001057512],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.02434056,0.002433102,0.6310247,0.0005375666,0.0011252,0.0009396094,0.0007055026,0.001664922,0.2628711,0.000253028,0.001061849,0.07304278],"study_design_scores_gemma":[0.0006333499,0.01990979,0.9058717,0.0001114169,0.001240384,0.001293439,0.0009930242,0.004852163,0.05851005,0.000546423,0.005971488,0.00006663038],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968959,0.0007493857,0.001168634,0.0001206421,0.00001610153,0.0001027021,0.0006255104,0.00001760856,0.0003036351],"genre_scores_gemma":[0.9944572,0.0003014159,0.003120666,0.0002830152,0.00001752594,0.0001376394,0.00125313,0.000009705587,0.0004195554],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001163438,"threshold_uncertainty_score":0.006152928,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005269310946716816,"score_gpt":0.209927714162801,"score_spread":0.2046584032160842,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}