{"id":"W2922062614","doi":"10.1128/jb.00731-18","title":"Entry Exclusion of Conjugative Plasmids of the IncA, IncC, and Related Untyped Incompatibility Groups","year":2019,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research; Fondation pour la Recherche Médicale; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Plasmid; Replicon; Salmonella enterica; Genetics; Genomic island; Antibiotic resistance; Horizontal gene transfer; Multiple drug resistance; Gene; Genome; Microbiology; Drug resistance; Antibiotics; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004079487,0.0001054104,0.0003742422,0.00003992966,0.00002315591,0.000003118743,0.0002223338,0.0002061764,0.00007124266],"category_scores_gemma":[0.0002050076,0.0000694956,0.0001033727,0.00006549217,0.0003426774,0.000007830973,0.0002331335,0.0001624533,0.000001129383],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001724928,"about_ca_system_score_gemma":0.0001056833,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007979388,"about_ca_topic_score_gemma":0.000006961072,"domain_scores_codex":[0.9987686,0.0002701958,0.0006222042,0.000138915,0.00009241993,0.0001076421],"domain_scores_gemma":[0.9984748,0.00006968268,0.0009584647,0.0002614229,0.0001997191,0.00003595295],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005139594,0.00003942086,0.3138636,0.00003620778,0.00006804382,8.872397e-7,0.0000958471,0.000006049302,0.6851231,0.00008114395,0.0000367618,0.0001350459],"study_design_scores_gemma":[0.001023841,0.0007511164,0.8352552,0.00009135331,0.00002610536,0.00008836645,0.0001335801,0.00001513753,0.1618118,0.0003933564,0.0003386471,0.00007146365],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998729,0.0001840303,0.00001929076,0.0000877223,0.0004466938,0.0001262548,0.00001385122,9.506969e-7,0.0003921873],"genre_scores_gemma":[0.999442,0.000162923,0.0002203632,0.00003540884,0.00004026815,2.003488e-7,0.000006923473,0.000007953764,0.00008397998],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5233113,"threshold_uncertainty_score":0.2833948,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004858671572330471,"score_gpt":0.2269554854625013,"score_spread":0.2220968138901708,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}