{"id":"W2922340679","doi":"10.1128/microbiolspec.bai-0005-2019","title":"Make It a Sweet Home: Responses of <i>Chlamydia trachomatis</i> to the Challenges of an Intravacuolar Lifestyle","year":2019,"lang":"en","type":"review","venue":"Microbiology Spectrum","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Indigenous and Northern Affairs Canada","keywords":"Vacuole; Biology; Cell biology; Chlamydia trachomatis; Obligate; Cytosol; Bacteria; Cytoplasm; Intracellular parasite; Microbiology; Intracellular; Biochemistry; Ecology; Genetics; Virology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002203324,0.0007306154,0.003070824,0.0009415399,0.0001749174,0.00001661499,0.001697853,0.001396698,0.0006601617],"category_scores_gemma":[0.0005546597,0.0004975118,0.0006557889,0.0006798765,0.0009983559,0.00008197704,0.0004490777,0.001658919,0.002048751],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001372437,"about_ca_system_score_gemma":0.0006763032,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001376507,"about_ca_topic_score_gemma":0.000413542,"domain_scores_codex":[0.9926886,0.003708661,0.001409371,0.001227665,0.00006085755,0.0009048416],"domain_scores_gemma":[0.9949261,0.001546066,0.0008311672,0.002448335,0.0001937822,0.00005457325],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0008408924,0.002100697,0.0001561343,0.01332376,0.005335886,0.00003414075,0.001942313,0.000007121381,0.1473482,0.004511054,0.01153705,0.8128628],"study_design_scores_gemma":[0.000433491,0.001087103,0.0005873315,0.001521875,0.0005399641,0.001702666,0.0001693019,4.461587e-8,0.01028686,0.00006465738,0.9831184,0.000488325],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01082852,0.9819814,0.00001238824,0.001130368,0.001356245,0.002404605,0.001430797,0.00006589085,0.0007897664],"genre_scores_gemma":[0.004444495,0.9919962,0.00008553097,0.00007257699,0.0001726695,0.0002015419,0.0004210565,0.0001087533,0.002497223],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9715813,"threshold_uncertainty_score":0.9998997,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04990865330691203,"score_gpt":0.337811142489987,"score_spread":0.287902489183075,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}