{"id":"W2922490134","doi":"10.1111/ppa.13015","title":"Improved detection and identification of the sudden oak death pathogen <i>Phytophthora ramorum</i> and the Port Orford cedar root pathogen <i>Phytophthora lateralis</i>","year":2019,"lang":"en","type":"article","venue":"Plant Pathology","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Natural Resources Canada; FPInnovations; Canadian Forest Service; Canadian Food Inspection Agency; Biopterre; University of British Columbia","funders":"Natural Resources Canada; FPInnovations; Canadian Food Inspection Agency; Genome Canada","keywords":"Phytophthora ramorum; Biology; Phytophthora; Primer (cosmetics); Genome; Polymerase chain reaction; Oomycete; TaqMan; Pathogen; Genetics; Gene; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009495131,0.000244638,0.0004070356,0.00002116255,0.0003121319,0.00006699992,0.0003425492,0.0002199814,0.00001889591],"category_scores_gemma":[0.00006034831,0.00008213337,0.000110521,0.000225979,0.0002276382,0.0001179376,0.0001954537,0.0002227335,0.000007040564],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001300123,"about_ca_system_score_gemma":0.00001219659,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006685952,"about_ca_topic_score_gemma":0.0003705657,"domain_scores_codex":[0.99804,0.000382447,0.0004886488,0.0005229344,0.0002065575,0.0003594427],"domain_scores_gemma":[0.9989516,0.000264413,0.000410977,0.0002251352,0.00007575811,0.00007209419],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002432227,0.00002894476,0.02451215,0.00002872185,0.0000130098,0.00002174333,0.00003658643,0.000001849223,0.9718581,0.0002639309,0.00002000139,0.002971776],"study_design_scores_gemma":[0.0006532397,0.0002011187,0.945767,0.00003308893,0.00008136684,0.0009140899,0.0001636582,0.0003403256,0.04710613,0.0006316911,0.003827943,0.0002803753],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953739,0.0008023515,0.000009807783,0.0006431584,0.0004060819,0.0007351756,0.001747212,0.00003614965,0.0002461459],"genre_scores_gemma":[0.9987957,0.0002937622,0.0000314919,0.0002448685,0.0001162041,0.00004411765,0.0001583221,0.000003778923,0.0003117628],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9247519,"threshold_uncertainty_score":0.3349301,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007254017119935804,"score_gpt":0.182283953377833,"score_spread":0.1750299362578972,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}