{"id":"W2923013852","doi":"10.1016/j.cancergen.2019.03.004","title":"PTPRD copy number variants and Ewing's sarcoma: Strengthening the association and therapeutic implications","year":2019,"lang":"en","type":"article","venue":"Cancer Genetics","topic":"Sarcoma Diagnosis and Treatment","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; British Columbia Children's Hospital; B.C. Women's Hospital & Health Centre; Université de Montréal; McGill University Health Centre","funders":"University of British Columbia; Javna Agencija za Raziskovalno Dejavnost RS","keywords":"PMS2; Germline; Somatic cell; Copy-number variation; Sarcoma; Suppressor; Biology; Gene; Genetics; Cancer research; Protein tyrosine phosphatase; Germline mutation; Medicine; Mutation; Kinase; Pathology; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007291787,0.00008265454,0.0001219863,0.00001296033,0.00007992747,0.00003009928,0.00003292955,0.00004908746,0.00008523401],"category_scores_gemma":[0.00001002963,0.00005646573,0.00002242944,0.00006630553,0.0000207016,0.00001271794,0.00002540946,0.00007044626,0.00001621589],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001090225,"about_ca_system_score_gemma":0.00004242106,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005778342,"about_ca_topic_score_gemma":0.0000240052,"domain_scores_codex":[0.9994825,0.00002285582,0.0001058744,0.0001549997,0.0001001679,0.000133591],"domain_scores_gemma":[0.9995023,0.0001496758,0.00006318538,0.0001832079,0.00005256058,0.0000490556],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000006842158,0.00003868389,0.9530502,0.000009487875,0.0001188405,5.858273e-7,0.000331726,0.0000037299,0.0004569341,0.0003433115,0.00023187,0.04540779],"study_design_scores_gemma":[0.0008993437,0.00004060162,0.9878985,0.00002636575,0.0002194027,0.00001247083,0.00007933544,0.0001852071,0.0008333632,0.0003114254,0.009431642,0.00006236891],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9864352,0.008818936,0.00001394466,0.003362638,0.00009686437,0.0003084617,0.00001598523,0.00001405691,0.0009339112],"genre_scores_gemma":[0.994957,0.003537222,0.0002249031,0.0008411675,0.00008229202,0.00006336493,0.000005476516,0.00001370777,0.0002748524],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04534543,"threshold_uncertainty_score":0.2302606,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02413518755686964,"score_gpt":0.3070623022855882,"score_spread":0.2829271147287185,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}