{"id":"W2923032274","doi":"10.3390/v11030299","title":"Metagenomes of a Freshwater Charavirus from British Columbia Provide a Window into Ancient Lineages of Viruses","year":2019,"lang":"en","type":"article","venue":"Viruses","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Human virome; Genome; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009526769,0.0001200188,0.0003282763,0.00002890172,0.00006056614,0.0001003514,0.0002777032,0.00006896007,0.02240512],"category_scores_gemma":[0.0000290576,0.0001455824,0.0001247197,0.0001509622,0.0002015684,0.000409897,0.0002404087,0.0000971984,0.0006049905],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005603581,"about_ca_system_score_gemma":0.00001816509,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.3347149,"about_ca_topic_score_gemma":0.2089918,"domain_scores_codex":[0.9988256,0.00004687886,0.0003972838,0.0003320644,0.0001840613,0.0002141303],"domain_scores_gemma":[0.9992898,0.00006385753,0.0002246356,0.0003331625,0.00002083335,0.0000677513],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002330457,0.0001640681,0.08623476,0.00002008345,0.00004851623,0.000004213278,0.0004548401,0.00001971148,0.9068199,8.829338e-7,0.003302191,0.002907518],"study_design_scores_gemma":[0.0003193736,0.0001205022,0.3450455,0.00006190353,0.0000407909,0.000004068731,0.00007416758,0.00001023133,0.4940342,0.00003861891,0.1600844,0.0001662391],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978535,0.000345566,0.00001533703,0.0000192782,0.0002699574,0.0003346482,0.0007123787,0.00002835186,0.0004210539],"genre_scores_gemma":[0.9959663,0.00008393054,0.001599471,0.0008685865,0.00004050241,0.00001895975,0.00001389527,0.00002295159,0.001385445],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4127857,"threshold_uncertainty_score":0.9784885,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01210913506357282,"score_gpt":0.2326567944638355,"score_spread":0.2205476594002627,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}