{"id":"W2923249399","doi":"10.1128/aem.00139-19","title":"Clinically Unreported Salmonellosis Outbreak Detected via Comparative Genomic Analysis of Municipal Wastewater <i>Salmonella</i> Isolates","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":66,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Ministry of Science,Technology and Research; National Science Foundation of Sri Lanka; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Outbreak; Public health; Salmonella; Wastewater; Environmental health; Infectious disease (medical specialty); Biology; Geography; Veterinary medicine; Disease; Medicine; Virology; Environmental science; Bacteria; Environmental engineering","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002383003,0.0002447767,0.0002749882,0.0006483025,0.0003430446,0.0005570485,0.0001392533,0.0002962928,0.0006317442],"category_scores_gemma":[0.0005179032,0.0001348906,0.0003679565,0.0008604173,0.0002739702,0.0001286164,0.0003122289,0.0002291031,0.0001180785],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002151426,"about_ca_system_score_gemma":0.0003383526,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004348224,"about_ca_topic_score_gemma":0.005786295,"domain_scores_codex":[0.9996336,0.00004341226,0.00004393106,0.0001347478,0.00007007876,0.00007423942],"domain_scores_gemma":[0.9996883,0.00006356647,0.000129847,0.00001960944,0.00005733618,0.00004134519],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004391325,0.0001190009,0.1403337,0.00009685787,0.00007044484,0.0005858871,0.0004842473,0.0001016151,0.8527779,0.00005374863,0.00009216189,0.004845259],"study_design_scores_gemma":[0.00001076142,0.000441405,0.9301251,0.00002160297,0.0001587172,0.002077724,0.001396696,0.0006974394,0.06366416,0.00004424124,0.001343906,0.00001820324],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988313,0.0000924144,0.0002795212,0.00001846559,0.00000390628,0.00001054278,0.0004989936,0.000006247936,0.0002586253],"genre_scores_gemma":[0.997542,0.0001003401,0.000885292,0.00004454324,0.000003414452,0.00001105682,0.001250269,0.000004820281,0.0001581934],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004348224,"threshold_uncertainty_score":0.008645833,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01386424328906043,"score_gpt":0.2113293492711164,"score_spread":0.197465105982056,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}