{"id":"W2923249399","doi":"10.1128/aem.00139-19","title":"Clinically Unreported Salmonellosis Outbreak Detected via Comparative Genomic Analysis of Municipal Wastewater <i>Salmonella</i> Isolates","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":66,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Ministry of Science,Technology and Research; National Science Foundation of Sri Lanka; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Outbreak; Public health; Salmonella; Wastewater; Environmental health; Infectious disease (medical specialty); Biology; Geography; Veterinary medicine; Disease; Medicine; Virology; Environmental science; Bacteria; Environmental engineering","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002501268,0.0002955484,0.0009432342,0.00004748027,0.00008013908,0.000009142749,0.0002481136,0.0003127307,0.0008059756],"category_scores_gemma":[0.00000303384,0.0001396526,0.0002291358,0.0002328221,0.0003628284,0.00003091695,0.0002598125,0.0001792597,0.0001270712],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002786714,"about_ca_system_score_gemma":0.000002544244,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002419884,"about_ca_topic_score_gemma":0.00008245856,"domain_scores_codex":[0.9979435,0.0001586171,0.0007745328,0.0006598944,0.00004296574,0.0004204482],"domain_scores_gemma":[0.9989179,0.0004318586,0.0003704837,0.0001657806,0.000007038092,0.0001069698],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001419624,0.0001085981,0.2029756,0.000002848158,0.0005174845,0.000001047704,0.0001840344,0.00007752737,0.7951085,0.000006553616,0.00001223569,0.000863572],"study_design_scores_gemma":[0.0005929236,0.000683353,0.920786,0.000005213262,0.000684085,0.00004352191,0.001275001,0.0006593002,0.07305401,0.0001252542,0.001574221,0.0005171691],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987135,0.0002290789,0.000004691491,0.00004736217,0.0000758023,0.0003094999,0.0001944094,0.00003126529,0.0003944047],"genre_scores_gemma":[0.9980855,0.0001671253,0.00008175667,0.0002972503,0.0000327926,0.00001480853,0.001231145,0.000002939026,0.00008666529],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7220545,"threshold_uncertainty_score":0.8824868,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01386424328906043,"score_gpt":0.2113293492711164,"score_spread":0.197465105982056,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}