{"id":"W2923253179","doi":"10.1093/gbe/evz062","title":"Amplification Dynamics of Platy-1 Retrotransposons in the Cebidae Platyrrhine Lineage","year":2019,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"National Institute of General Medical Sciences; Burke Museum, University of Washington; Yale University; National Institutes of Health; University of Calgary; Louisiana State University; University of Washington","keywords":"Platy; Biology; Cebidae; Marmoset; Lineage (genetic); Evolutionary biology; Genome; Zoology; Genetics; Anatomy; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001803076,0.00005391877,0.0000838211,0.000009147309,0.00006201034,0.000004484453,0.00009865358,0.00009649292,0.00005659963],"category_scores_gemma":[0.00001029515,0.00001993481,0.00002508407,0.0001718787,0.00004477347,0.00002638515,0.00001323547,0.00006874,0.00001189105],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001676105,"about_ca_system_score_gemma":0.000004370431,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001990949,"about_ca_topic_score_gemma":0.001456549,"domain_scores_codex":[0.9995317,0.00005804042,0.0001365469,0.0001341941,0.00003570599,0.0001038234],"domain_scores_gemma":[0.9997849,0.00008620407,0.00005045985,0.00004532099,0.00001887967,0.00001423345],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003271956,0.00005696499,0.5234272,0.000007026159,0.000006487339,1.951177e-7,0.0002065166,0.00003176372,0.4449306,0.02936342,0.000003316518,0.001933781],"study_design_scores_gemma":[0.0000984521,0.0001620665,0.9947435,0.000003571989,0.000004843287,0.000004384468,0.0001595687,0.0006303546,0.00006965724,0.003297001,0.0007775491,0.00004900235],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978683,0.0002665291,0.00007293805,0.001108024,0.0000559426,0.0001743085,0.0001049411,0.000007873705,0.0003411478],"genre_scores_gemma":[0.999392,0.000061213,0.00005067776,0.00003654833,0.00005799346,0.000007177152,0.0003512445,2.81959e-7,0.00004285743],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4713164,"threshold_uncertainty_score":0.08129178,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009891239132493642,"score_gpt":0.2070394786736057,"score_spread":0.197148239541112,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}