{"id":"W2923550135","doi":"10.1080/15592294.2019.1588685","title":"Locus-specific DNA methylation prediction in cord blood and placenta","year":2019,"lang":"en","type":"article","venue":"Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université du Québec à Chicoutimi; Université de Sherbrooke; Centre Hospitalier Universitaire de Sherbrooke","funders":"National Institute of Environmental Health Sciences; Fundamental Research Funds for the Central Universities; National Natural Science Foundation of China","keywords":"Biology; DNA methylation; Placenta; Cord blood; Locus (genetics); Genetics; Methylation; DNA; Computational biology; Gene; Andrology; Evolutionary biology; Pregnancy; Fetus; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002651453,0.0001501878,0.000137291,0.0000840317,0.00003885573,0.00002975557,0.00009045943,0.0001947985,0.00005263556],"category_scores_gemma":[0.00003782339,0.0001621912,0.00003744046,0.0001219497,0.00003901257,0.000004767106,0.00007435079,0.00009410773,0.00002778601],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001416899,"about_ca_system_score_gemma":0.00002764411,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009125008,"about_ca_topic_score_gemma":0.00003745599,"domain_scores_codex":[0.9988784,0.00007704594,0.0002826143,0.000397176,0.0001508111,0.0002139342],"domain_scores_gemma":[0.9994425,0.00002822535,0.00008395558,0.0003200558,0.00005442922,0.00007082278],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006024259,0.00005848462,0.1362145,0.00001439396,0.00001643834,0.000001020597,0.00005343251,0.0007184737,0.8536304,0.00008525293,0.00006128389,0.009086047],"study_design_scores_gemma":[0.001354399,0.0007348764,0.1661669,0.00001932293,0.00002077829,0.000002446873,0.00006604641,0.0004212326,0.7890775,0.0004804053,0.04138944,0.0002666803],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.98988,0.006206778,0.001612967,0.000048497,0.0003047499,0.000321946,0.00002085434,0.00001148177,0.001592756],"genre_scores_gemma":[0.9940171,0.003873012,0.0009993429,0.00003262099,0.0001620958,0.00001052727,0.0001660004,0.00002681466,0.0007125213],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06455291,"threshold_uncertainty_score":0.6613967,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0092788131498165,"score_gpt":0.2323402204617556,"score_spread":0.2230614073119391,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}