{"id":"W2923704743","doi":"10.1007/s00248-019-01361-3","title":"Lower Respiratory Tract Microbiome and Resistome of Bovine Respiratory Disease Mortalities","year":2019,"lang":"en","type":"article","venue":"Microbial Ecology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":72,"is_retracted":false,"has_abstract":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Alberta Livestock and Meat Agency","keywords":"Biology; Bovine respiratory disease; Resistome; Microbiome; Microbiology; Metagenomics; Antibiotic resistance; Antibiotics; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0005274232,0.000319067,0.000619658,0.0005178287,0.0002313499,0.00002663032,0.0002851279,0.0004100265,0.005993601],"category_scores_gemma":[0.0001255054,0.0003161814,0.0002211842,0.0002745803,0.0008981627,0.0001632364,0.0002750177,0.0004024766,0.001207337],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001055244,"about_ca_system_score_gemma":0.0004356561,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001370697,"about_ca_topic_score_gemma":0.0001213368,"domain_scores_codex":[0.9975205,0.0004617433,0.0006447832,0.0006411643,0.00004703516,0.0006847657],"domain_scores_gemma":[0.9986289,0.0002210413,0.0002189684,0.0006143981,0.0001898969,0.0001268459],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0008354477,0.0005796464,0.05768049,0.0002011262,0.000143961,0.00002839591,0.00006289344,0.000003552441,0.9264506,0.0009592694,0.01288032,0.0001743484],"study_design_scores_gemma":[0.007492078,0.002289712,0.3822069,0.0001521339,0.0002581243,0.000122026,0.0002106938,0.000001799288,0.1342283,0.0003837365,0.4715465,0.001107911],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923881,0.004128174,0.000004276321,0.000183203,0.001116552,0.0006182819,0.000475205,0.0000747181,0.001011432],"genre_scores_gemma":[0.9946139,0.00006266664,0.00001664488,0.0008694891,0.00006802347,0.00002738177,0.00009495913,0.00004317147,0.004203787],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7922222,"threshold_uncertainty_score":0.999929,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01472827907095576,"score_gpt":0.2620711923724516,"score_spread":0.2473429133014958,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}