{"id":"W2927403636","doi":"10.1016/j.freeradbiomed.2019.03.032","title":"Distribution of reactive oxygen species defense mechanisms across domain bacteria","year":2019,"lang":"en","type":"review","venue":"Free Radical Biology and Medicine","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":142,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Waterloo","funders":"Canada Research Chairs; Government of Ontario","keywords":"Bacteria; Biology; Reactive oxygen species; Genome; Anaerobic bacteria; Phylum; Metagenomics; Computational biology; Ecology; Evolutionary biology; Gene; Cell biology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006867262,0.0002992612,0.001597083,0.00002675833,0.00017572,0.000001764856,0.0004977484,0.0008710307,0.003401451],"category_scores_gemma":[0.0002859937,0.0001982533,0.0001354526,0.0001451774,0.00287557,0.00003160792,0.0006347768,0.0006202857,0.0001069641],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008805848,"about_ca_system_score_gemma":0.00002913514,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001559124,"about_ca_topic_score_gemma":0.0001452012,"domain_scores_codex":[0.9979717,0.0007516597,0.0004786271,0.0003826411,0.00006200269,0.0003533936],"domain_scores_gemma":[0.9983792,0.0006390123,0.0003387716,0.0005210213,0.000008796039,0.0001132282],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0008611987,0.0007959099,0.0005947169,0.009672111,0.001582178,0.00007114544,0.002508583,5.416833e-7,0.03991691,0.1316683,0.1067752,0.7055532],"study_design_scores_gemma":[0.0004635723,0.0006064695,0.001051235,0.0006042127,0.0002059809,0.00007239449,0.00004251283,2.09288e-7,0.00001629168,0.01600504,0.9807488,0.0001833288],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.009092998,0.984031,0.0006419956,0.0004859956,0.001019569,0.0008996989,0.001511989,0.00003249062,0.002284233],"genre_scores_gemma":[0.001715597,0.9936805,0.0001695132,0.0001792982,0.0001385254,0.00001886364,0.003791188,0.00001346521,0.0002930844],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8739735,"threshold_uncertainty_score":0.9998381,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03339895344888057,"score_gpt":0.31416943637525,"score_spread":0.2807704829263695,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}