{"id":"W2929627743","doi":"10.1186/s12915-019-0634-8","title":"Oxygen induces the expression of invasion and stress response genes in the anaerobic salmon parasite Spironucleus salmonicida","year":2019,"lang":"en","type":"article","venue":"BMC Biology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Stiftelsen för Strategisk Forskning; Dalhousie University; Svenska Forskningsrådet Formas; European Research Council; Uppsala Universitet; Vetenskapsrådet; Stiftelsen för Strategisk Forskning; European Molecular Biology Organization","keywords":"Biology; Transcriptome; Microbiology; Gene; Superoxide dismutase; Reactive oxygen species; Oxidative stress; Cell biology; Biochemistry; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001013281,0.0002633751,0.0002367176,0.000212921,0.0001672194,0.0001988893,0.00008570046,0.0002439784,0.0008298525],"category_scores_gemma":[0.0001439956,0.0001228738,0.0002216337,0.000178542,0.00016505,0.0001534206,0.0003670116,0.0003754272,0.0002567236],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001829914,"about_ca_system_score_gemma":0.000179713,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007166277,"about_ca_topic_score_gemma":0.0008849428,"domain_scores_codex":[0.9998767,0.0000110908,0.00000836571,0.00003961487,0.00002347233,0.00004072429],"domain_scores_gemma":[0.9998538,0.00002454436,0.00004808536,0.000008749089,0.00003111616,0.00003372252],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001121964,0.00001319128,0.002360625,0.00004633332,0.00000328333,0.0000290678,0.00004038333,0.00002049459,0.9968022,0.00001084741,0.00004486264,0.0005165545],"study_design_scores_gemma":[0.00005049919,0.001812801,0.6505843,0.00006303164,0.00007630802,0.0004021166,0.0009720355,0.002063208,0.3394913,0.0002040349,0.004253766,0.00002655138],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980059,0.0004205871,0.0003201941,0.00005022204,0.0000125823,0.000009897138,0.0006889054,0.00002191297,0.0004696585],"genre_scores_gemma":[0.9942602,0.0003033168,0.0007902013,0.000138613,0.00001049032,0.00004018886,0.002799294,0.00001588333,0.001641658],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008298525,"threshold_uncertainty_score":0.002776086,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01915304526660393,"score_gpt":0.2677519757275296,"score_spread":0.2485989304609256,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}