{"id":"W2930461140","doi":"10.1097/coh.0000000000000541","title":"Clinical and evolutionary consequences of HIV adaptation to HLA","year":2019,"lang":"en","type":"review","venue":"Current Opinion in HIV and AIDS","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"AIDS Vancouver; Simon Fraser University","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Human leukocyte antigen; Adaptation (eye); Immunogen; Human immunodeficiency virus (HIV); Population; Epitope; Immunology; HIV vaccine; Biology; Medicine; Virology; Antigen; Antibody; Neuroscience","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003021065,0.0001950731,0.0008787267,0.0002380505,0.00004472016,0.000007748466,0.0001064826,0.0002347976,0.00007404872],"category_scores_gemma":[0.0001050059,0.0001445377,0.0001232057,0.0001397604,0.0003916399,0.00004332855,0.000110319,0.0003348256,0.0004026068],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002379078,"about_ca_system_score_gemma":0.0002612224,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001144541,"about_ca_topic_score_gemma":7.227217e-7,"domain_scores_codex":[0.9983327,0.0004624555,0.0005853077,0.0003707332,0.00004359197,0.0002051988],"domain_scores_gemma":[0.9991918,0.0004170424,0.0001421867,0.0001611123,0.00003951639,0.00004836536],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000319201,0.0001330774,0.005579937,0.00505055,0.00009772196,5.029517e-7,0.00007827683,3.328076e-7,0.000001301422,0.000902775,0.004748489,0.9833751],"study_design_scores_gemma":[0.000678254,0.0003225966,0.001099474,0.007635799,0.0000644454,0.00002209928,0.00005407997,9.640914e-7,5.558947e-7,0.00007268568,0.9899116,0.0001374921],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002014182,0.9967408,0.0000417527,0.00004570692,0.001661744,0.0006301511,0.0005990441,0.000008409712,0.0000709708],"genre_scores_gemma":[0.0006271753,0.997453,0.0001157853,0.00000229484,0.00005832385,0.00007530962,0.001379677,0.000008128475,0.0002803598],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9851631,"threshold_uncertainty_score":0.5894075,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1876646656475954,"score_gpt":0.441174061196859,"score_spread":0.2535093955492635,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}