{"id":"W2932012837","doi":"10.1038/s41586-019-1072-z","title":"A widespread coral-infecting apicomplexan with chlorophyll biosynthesis genes","year":2019,"lang":"en","type":"article","venue":"Nature","topic":"Coral and Marine Ecosystems Studies","field":"Environmental Science","cited_by":154,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Symbiodinium; Plastid; Obligate; Lineage (genetic); Obligate parasite; Coral; Endosymbiosis; Coral reef; Evolutionary biology; Genome; Symbiosis; Botany; Gene; Chloroplast; Ecology; Genetics; Host (biology); Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00007661647,0.0001455548,0.0001740497,0.0000217758,0.0001078381,0.00002483893,0.0001523079,0.0001982731,0.001186424],"category_scores_gemma":[0.00002374404,0.00009595264,0.00004375006,0.000193921,0.00004007634,0.0001215563,0.0002375981,0.0004375614,0.001034577],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006225067,"about_ca_system_score_gemma":0.000004116306,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003962316,"about_ca_topic_score_gemma":0.0007069255,"domain_scores_codex":[0.9991598,0.00001826167,0.00009474387,0.000293381,0.0002073137,0.0002264678],"domain_scores_gemma":[0.9995957,0.00006556024,0.00006130408,0.0002190498,0.00001018885,0.00004819148],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003810718,0.000040309,0.953808,0.00003309568,0.0000292131,0.000009644036,0.000109043,0.00003053717,0.02199199,0.0001404809,0.001898929,0.02187062],"study_design_scores_gemma":[0.0005287926,0.0002986634,0.8024378,0.00008889291,0.00003557836,0.00004715809,0.0001973869,0.0004211314,0.0120999,0.0002938476,0.183021,0.0005298201],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9728585,0.0001838803,0.000006293616,0.0003802069,0.0002584504,0.0002138332,0.000004130733,0.00007216416,0.02602247],"genre_scores_gemma":[0.9961281,0.00001308197,0.0003543879,0.0002745005,0.00006834581,0.00001010476,0.000002287453,0.00001391995,0.003135242],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1811221,"threshold_uncertainty_score":0.9997432,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00427576468788468,"score_gpt":0.193330562576832,"score_spread":0.1890547978889473,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}