{"id":"W2932144479","doi":"10.3390/v11040308","title":"Molecular Characterization and Evolutionary Analyses of Carnivore Protoparvovirus 1 NS1 Gene","year":2019,"lang":"en","type":"article","venue":"Viruses","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"Ministero della Salute","keywords":"Biology; Genetics; Carnivore; Gene; Canine parvovirus; Phylogenetic tree; Synonymous substitution; Lineage (genetic); Coding region; Silent mutation; Capsid; Phylogenetics; Sequence analysis; Viral evolution; Nonsynonymous substitution; Codon usage bias; Mutation; Parvovirus; Virus; Genome; Missense mutation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009980399,0.0001212275,0.0001468245,0.00008277794,0.0000327277,0.00001198544,0.0001303871,0.00009256631,0.00006849866],"category_scores_gemma":[0.00002745872,0.0001143935,0.00005198501,0.0001233237,0.00008055223,0.000008158788,0.0000914209,0.000053503,0.00002271336],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008881149,"about_ca_system_score_gemma":0.00008315366,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003204433,"about_ca_topic_score_gemma":0.000005801435,"domain_scores_codex":[0.999123,0.00009035821,0.0001673916,0.0002792912,0.0001733014,0.0001667071],"domain_scores_gemma":[0.9994287,0.000007258075,0.00008089276,0.0003316222,0.00009698373,0.0000545193],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005883267,0.000043138,0.01831458,0.00003174967,0.00007217569,0.000001944442,0.00001285887,0.00009227831,0.9795337,0.00001618242,0.00002320738,0.001269908],"study_design_scores_gemma":[0.0003703792,0.0008678054,0.0109458,0.00001003182,0.00001346275,0.000004979152,0.00001009394,0.00007391279,0.9844277,0.00001609846,0.003134771,0.0001249544],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975252,0.001564284,0.0002003585,0.00002551992,0.00003404028,0.0004570592,0.00006791017,0.00001041688,0.0001152126],"genre_scores_gemma":[0.9988129,0.0003615462,0.0001443492,0.0002352197,0.00005611952,0.00004690002,0.0001713389,0.00002368099,0.0001479851],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007368788,"threshold_uncertainty_score":0.4664831,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02895923252510173,"score_gpt":0.3270564312209068,"score_spread":0.298097198695805,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}