{"id":"W2934737189","doi":"10.1371/journal.pone.0214201","title":"A whole genome scan of SNP data suggests a lack of abundant hard selective sweeps in the genome of the broad host range plant pathogenic fungus Sclerotinia sclerotiorum","year":2019,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Plant pathogens and resistance mechanisms","field":"Agricultural and Biological Sciences","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agence Nationale de la Recherche; Curtin University of Technology; Grains Research and Development Corporation","keywords":"Sclerotinia sclerotiorum; Biology; Population; Selective sweep; Population genomics; Linkage disequilibrium; Genetics; Runs of Homozygosity; Evolutionary biology; Genome; Genotype; Genomics; Single-nucleotide polymorphism; Gene; Botany; Haplotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002840314,0.0002155429,0.0002921609,0.0006422786,0.0002722493,0.0003795379,0.0001463567,0.0003314606,0.0008355654],"category_scores_gemma":[0.0007769106,0.0001165846,0.0002213242,0.0009828167,0.0003354063,0.0001619145,0.0001820466,0.000334305,0.0001798566],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001554816,"about_ca_system_score_gemma":0.0002019191,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003691123,"about_ca_topic_score_gemma":0.009720788,"domain_scores_codex":[0.9998178,0.00003177936,0.00001089488,0.00007474418,0.00003764708,0.00002720206],"domain_scores_gemma":[0.99926,0.0002501267,0.0002599455,0.00004832326,0.0000828768,0.00009865355],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007004644,0.00009513496,0.4598056,0.0003242775,0.0006121326,0.0008558849,0.001026981,0.0006083834,0.5126439,0.0001985237,0.0003336707,0.02279496],"study_design_scores_gemma":[0.000005554858,0.00007135733,0.9959287,0.000007972722,0.00005900102,0.0004084636,0.0001064966,0.0001639244,0.002481165,0.00004801952,0.0007152303,0.00000419915],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982798,0.0003736317,0.0003454993,0.00002806576,0.000001758267,0.00000391665,0.0006445556,0.00001157461,0.0003112149],"genre_scores_gemma":[0.9969894,0.0002164481,0.0007822571,0.00006351746,0.000004017747,0.000004528317,0.001675796,0.000004657661,0.0002593328],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003691123,"threshold_uncertainty_score":0.007339299,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08767026953484995,"score_gpt":0.2230487318355864,"score_spread":0.1353784623007364,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}