{"id":"W2936345427","doi":"10.1101/607325","title":"The neglected part of the microbiome: Prophage TJ1 regulates the bacterial community of the metaorganism <i>Hydra</i>","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Volkswagen Foundation; Deutsche Forschungsgemeinschaft; Canadian Institute for Advanced Research","keywords":"Prophage; Biology; Lernaean Hydra; Microbiome; Multicellular organism; Bacteria; Host (biology); Microbiology; Lysogenic cycle; Bacterial cell structure; Bacteriophage; Colonization; In vivo; Bacterial virus; Genetics; Escherichia coli; Cell biology; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009571126,0.0002575365,0.0002174374,0.0001647777,0.0002594661,0.0005416101,0.0001691998,0.0002691626,0.001596718],"category_scores_gemma":[0.0001192145,0.0001283762,0.0001549482,0.00009986725,0.0003524843,0.0002048041,0.0004960378,0.000579867,0.0004480639],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002865258,"about_ca_system_score_gemma":0.0002160277,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001047015,"about_ca_topic_score_gemma":0.0008067541,"domain_scores_codex":[0.999903,0.000007064181,0.000003482161,0.00003598284,0.00002616225,0.00002445404],"domain_scores_gemma":[0.999882,0.00001633284,0.00002851117,0.00001320924,0.00001522057,0.00004476988],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004048017,0.000003974613,0.0006105332,0.00001821642,0.000001809071,0.00002835639,0.00001191598,0.00003339552,0.9987144,0.00004761603,0.00002996711,0.0004593299],"study_design_scores_gemma":[0.000008744725,0.0001336909,0.08060307,0.00001141211,0.00001494581,0.0003427709,0.0002022188,0.00177165,0.9137591,0.0001542813,0.002986401,0.0000117761],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961535,0.000603249,0.00166697,0.000161049,0.00002543673,0.000006559299,0.0002564801,0.00008485957,0.001041866],"genre_scores_gemma":[0.9950406,0.0002244129,0.0009820972,0.0000643458,0.00001205373,0.000007451523,0.0003221721,0.00005357499,0.003293213],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001596718,"threshold_uncertainty_score":0.00534153,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008221092766109108,"score_gpt":0.1888599356559221,"score_spread":0.180638842889813,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}