{"id":"W2936760626","doi":"10.1093/bioinformatics/btz278","title":"ORCA: a comprehensive bioinformatics container environment for education and research","year":2019,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genetics, Bioinformatics, and Biomedical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia","funders":"National Human Genome Research Institute; Genome British Columbia; Genome Canada","keywords":"License; Container (type theory); MIT License; Computer science; Suite; Debugging; Software; Source code; Software engineering; Operating system; World Wide Web; Bioinformatics; Biology; Engineering","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006740146,0.002410943,0.00211366,0.002767267,0.00161031,0.005776115,0.008302616,0.002189091,0.1816917],"category_scores_gemma":[0.01723215,0.002595944,0.002773655,0.003278157,0.001100771,0.008815853,0.009825276,0.005969735,0.2087345],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001596823,"about_ca_system_score_gemma":0.00480855,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003768488,"about_ca_topic_score_gemma":0.003316772,"domain_scores_codex":[0.9963248,0.0006121864,0.0003998335,0.0007538968,0.001262391,0.0006468917],"domain_scores_gemma":[0.9900661,0.00214026,0.0005828217,0.003146808,0.002079909,0.001984088],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005908794,0.0001303966,0.0005161932,0.0006620635,0.00006283532,0.0001341189,0.0002494795,0.001101651,0.004762761,0.008136204,0.9175426,0.06611089],"study_design_scores_gemma":[0.0004487581,0.00008184371,0.001357939,0.0002671222,0.00004564564,0.0002214542,0.00006737682,0.007993477,0.00688752,0.01510555,0.9673189,0.0002045052],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.001154167,0.0004114604,0.1621317,0.001084449,0.0004421185,0.0005135503,0.02810367,0.7787975,0.02736135],"genre_scores_gemma":[0.01776418,0.001145531,0.3720327,0.002641029,0.0003407057,0.002485932,0.1875201,0.3735822,0.04248762],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.1816917,"threshold_uncertainty_score":0.6078192,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03086956639264518,"score_gpt":0.3195236531301011,"score_spread":0.2886540867374559,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}