{"id":"W2938021965","doi":"10.1093/jac/dkz129","title":"Clonal expansion and spread of the ceftriaxone-resistant Neisseria gonorrhoeae strain FC428, identified in Japan in 2015, and closely related isolates","year":2019,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":69,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Japan Agency for Medical Research and Development","keywords":"Neisseria gonorrhoeae; Ceftriaxone; Spectinomycin; Microbiology; Strain (injury); Neisseriaceae; Cephalosporin; Biology; Gonococcal infection; Gonorrhea; Antibiotics; Virology; Sexually transmitted disease; Penicillin; Syphilis","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001054765,0.0001675544,0.0004623009,0.0003601396,0.00005544806,0.00002771451,0.0002111183,0.0002418753,0.0001651611],"category_scores_gemma":[0.00009903025,0.0001222321,0.0001058083,0.0003419704,0.0002658376,0.0002427734,0.00005497592,0.0007115302,0.000009021337],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006166803,"about_ca_system_score_gemma":0.000137642,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001997828,"about_ca_topic_score_gemma":0.00009735916,"domain_scores_codex":[0.9984125,0.0003057075,0.0007379298,0.000249037,0.00003670778,0.0002581445],"domain_scores_gemma":[0.9990219,0.000150196,0.0004287706,0.0002381267,0.0001390318,0.00002193509],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001500421,0.0002383294,0.07221692,0.0000348289,0.00009893843,0.000001240467,0.0007635638,0.00002297736,0.9232661,0.00005126798,0.0003338601,0.001471585],"study_design_scores_gemma":[0.005336189,0.0003931457,0.5679966,0.0002466291,0.00001474771,0.0004103614,0.0002838549,0.000006716225,0.4237678,0.0002101445,0.001186864,0.0001469334],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962594,0.001294453,0.000002565253,0.001551867,0.0004226168,0.0003713492,0.00001499406,0.000004658265,0.00007808609],"genre_scores_gemma":[0.9984928,0.0009356848,0.00005732808,0.00005659231,0.00002121786,9.474672e-7,0.000004162478,0.00001884861,0.000412366],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4994983,"threshold_uncertainty_score":0.4984481,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007783832150217835,"score_gpt":0.2588271519833721,"score_spread":0.2510433198331543,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}