{"id":"W2938099367","doi":"10.1371/journal.ppat.1007741","title":"Proteomics of intracellular Salmonella enterica reveals roles of Salmonella pathogenicity island 2 in metabolism and antioxidant defense","year":2019,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Regina","funders":"Bundesministerium für Bildung und Forschung; Universität Osnabrück; Deutsche Forschungsgemeinschaft","keywords":"Salmonella enterica; Endosome; Effector; Intracellular parasite; Biology; Intracellular; Salmonella; Cell biology; Pathogenicity island; Microbiology; Type three secretion system; Proteome; Vacuole; Virulence; Bacteria; Biochemistry; Cytoplasm; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008067385,0.0002782063,0.0001387704,0.0002437822,0.0001037999,0.000152194,0.00009758439,0.0002303228,0.000352342],"category_scores_gemma":[0.00007703459,0.000104337,0.0002317492,0.0001726601,0.00008895428,0.0001476197,0.0001117066,0.0001978819,0.000185711],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001233969,"about_ca_system_score_gemma":0.0001059792,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006157594,"about_ca_topic_score_gemma":0.0008354333,"domain_scores_codex":[0.9999571,0.000004121513,0.000003233036,0.00001334643,0.00001221123,0.00001004],"domain_scores_gemma":[0.9999486,0.000006648352,0.0000138712,0.000003832371,0.00001413622,0.00001293303],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000044144,0.000004926927,0.0006051267,0.00002221559,0.000003047917,0.00002833337,0.000008903527,0.00001327836,0.9988883,0.000007451956,0.0000138825,0.0003603522],"study_design_scores_gemma":[0.000009163316,0.0004897847,0.2013334,0.00002129554,0.00004359305,0.0009931738,0.000328638,0.00198118,0.7922023,0.00009956892,0.002485032,0.00001290231],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973161,0.0006071309,0.0009311271,0.00004608216,0.00000968351,0.000007465637,0.0007220568,0.00002002274,0.0003404337],"genre_scores_gemma":[0.9921255,0.0007024786,0.003460413,0.0000821712,0.000008103621,0.00001638696,0.002105666,0.00001520475,0.00148418],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006157594,"threshold_uncertainty_score":0.001224399,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01370871751711552,"score_gpt":0.202922812137369,"score_spread":0.1892140946202534,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}