{"id":"W2938785635","doi":"10.1371/journal.ppat.1007672","title":"Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection","year":2019,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institute on Drug Abuse; National Institutes of Health; Center for AIDS Research, University of Washington; University of Washington","keywords":"Immunology; Dysbiosis; Inflammation; Microbiome; Biology; Neutrophil extracellular traps; Intestinal mucosa; Gut flora; Medicine; Internal medicine; Bioinformatics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002636058,0.0001660554,0.0002603924,0.0003093144,0.0002183613,0.0003900208,0.00009273506,0.0002629446,0.0009198565],"category_scores_gemma":[0.0005993716,0.0001370719,0.00009871442,0.0002372855,0.0001842415,0.0002074562,0.0002778958,0.0003373855,0.00008198411],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00018185,"about_ca_system_score_gemma":0.0001210425,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005087432,"about_ca_topic_score_gemma":0.0006783055,"domain_scores_codex":[0.9998024,0.00006166186,0.00002008779,0.00004207556,0.00003731445,0.00003636804],"domain_scores_gemma":[0.9997399,0.00003900927,0.0001224354,0.00001516807,0.00003191459,0.0000515002],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003963289,0.000188343,0.5330085,0.0003018224,0.0001309964,0.001005622,0.0004023888,0.0002416954,0.4283933,0.000149279,0.000414027,0.03180076],"study_design_scores_gemma":[0.00001413498,0.000656297,0.9742821,0.00005119432,0.00005797736,0.001698258,0.0002798184,0.0005568938,0.02118738,0.0001272926,0.001078609,0.00001001878],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974064,0.001780611,0.0003104783,0.00004588775,0.000008388599,0.00001047839,0.000150228,0.000007875259,0.0002795098],"genre_scores_gemma":[0.9984952,0.0005361298,0.0004690341,0.00004645231,0.000007584513,0.00001361364,0.0001859731,0.000002552634,0.0002434233],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009198565,"threshold_uncertainty_score":0.003077209,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01407121731657873,"score_gpt":0.2217997035102484,"score_spread":0.2077284861936697,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}