{"id":"W2938826237","doi":"10.3390/metabo9040076","title":"Systems Biology and Multi-Omics Integration: Viewpoints from the Metabolomics Research Community","year":2019,"lang":"en","type":"article","venue":"Metabolites","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":695,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Omics; Metabolomics; Viewpoints; Systems biology; Data science; Proteomics; Genomics; Computational biology; Computer science; Biology; Bioinformatics; Genome; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002194028,0.0002198806,0.0004166325,0.00007544673,0.0004083074,0.0001101387,0.0004942968,0.0001775004,0.00002444968],"category_scores_gemma":[0.0006711764,0.0001436126,0.00008939195,0.0002235572,0.0003196354,0.000008257283,0.000597263,0.0005271238,0.0000464285],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001146676,"about_ca_system_score_gemma":0.00004373591,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009809032,"about_ca_topic_score_gemma":0.0001609593,"domain_scores_codex":[0.9975244,0.001251366,0.0003175373,0.0003888452,0.000143584,0.0003742468],"domain_scores_gemma":[0.9983401,0.0003628457,0.0001073388,0.0008608949,0.0002569247,0.00007193586],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000666241,0.0001021369,0.05573364,0.00001787539,0.000349163,2.939211e-7,0.0004033808,0.00000537595,0.9106817,0.02858462,0.001010397,0.003044757],"study_design_scores_gemma":[0.00219696,0.000370621,0.1047292,0.00003201453,0.0001778521,0.00001421276,0.006443004,0.0009341842,0.1968733,0.004934824,0.6826161,0.0006777607],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9286539,0.06827915,0.0007384383,0.0003499525,0.0006284507,0.0004688819,0.0002077686,0.00001372907,0.0006597435],"genre_scores_gemma":[0.9847188,0.01074178,0.00267085,0.0003311178,0.0003671052,0.00005888005,0.0002880686,0.00002707807,0.0007963414],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7138084,"threshold_uncertainty_score":0.5856353,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06347732655331946,"score_gpt":0.3493789257716667,"score_spread":0.2859015992183472,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}