{"id":"W2939734479","doi":"10.1094/pdis-03-19-0454-a","title":"The CpnClassiPhyR Is a Resource for <i>cpn</i>60 Universal Target-Based Classification of Phytoplasmas","year":2019,"lang":"en","type":"article","venue":"Plant Disease","topic":"Phytoplasmas and Hemiptera pathogens","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Saskatchewan","funders":"Agriculture and Agri-Food Canada; Western Canada Research Grid; Compute Canada; University of Saskatchewan","keywords":"Phytoplasma; Biology; Restriction fragment length polymorphism; Genetics; Phylogenetic tree; 16S ribosomal RNA; Ribosomal RNA; In silico; Gene; Computational biology; Polymerase chain reaction","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002144727,0.002457688,0.00176735,0.004548199,0.001178032,0.0022067,0.002293696,0.001250379,0.03002704],"category_scores_gemma":[0.00616127,0.001608954,0.001434314,0.002908636,0.000498707,0.002332136,0.002688007,0.00141373,0.02427208],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001232337,"about_ca_system_score_gemma":0.002291287,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008882414,"about_ca_topic_score_gemma":0.008606873,"domain_scores_codex":[0.9988457,0.00009558193,0.000146299,0.0003377155,0.0004434876,0.0001310678],"domain_scores_gemma":[0.9975756,0.0007049228,0.000498743,0.0004637243,0.0004110304,0.00034607],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00351041,0.0002532142,0.01537782,0.002989957,0.0003512871,0.0007904861,0.0007268482,0.002346965,0.08266761,0.004874393,0.5838463,0.3022648],"study_design_scores_gemma":[0.0006008506,0.0002680397,0.02508499,0.0008905183,0.0002434728,0.001536679,0.0001626212,0.04512922,0.05149685,0.006482531,0.867687,0.0004172299],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.02448916,0.001922061,0.1489902,0.0004911266,0.0004113039,0.0008733951,0.2656708,0.5276812,0.0294707],"genre_scores_gemma":[0.04988723,0.001334079,0.3368403,0.0005741336,0.0001360802,0.001412879,0.5235429,0.07084256,0.01542979],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.03002704,"threshold_uncertainty_score":0.1004505,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01694244361302422,"score_gpt":0.2021840285209484,"score_spread":0.1852415849079242,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}