{"id":"W2939875343","doi":"10.1101/608356","title":"VariCarta: a comprehensive database of harmonized genomic variants found in ASD sequencing studies","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Autism Spectrum Disorder Research","field":"Neuroscience","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia Hospital","funders":"Simons Foundation Autism Research Initiative","keywords":"Autism; Harmonization; Computational biology; Autism spectrum disorder; Biology; Computer science; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008387185,0.001710691,0.003071356,0.03256415,0.001234424,0.006099443,0.004349907,0.002333113,0.02240929],"category_scores_gemma":[0.04240664,0.001282683,0.00202406,0.02791823,0.0008597145,0.002605591,0.007300451,0.001661609,0.01109438],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001284846,"about_ca_system_score_gemma":0.005985937,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004838021,"about_ca_topic_score_gemma":0.008286553,"domain_scores_codex":[0.9924511,0.00147874,0.002693344,0.002075788,0.001000471,0.0003005357],"domain_scores_gemma":[0.9694161,0.01546181,0.006186159,0.004905635,0.00246419,0.001566097],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003582411,0.0002233324,0.06212478,0.04541865,0.005310655,0.003759433,0.003448129,0.006471427,0.01349385,0.01592198,0.6712376,0.1690078],"study_design_scores_gemma":[0.0009471193,0.0002041896,0.05100105,0.006431446,0.002701003,0.003005867,0.000618561,0.002861473,0.004223173,0.01063386,0.916987,0.0003851737],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.008967957,0.005684727,0.007136255,0.0003434657,0.000106149,0.0003507185,0.9661323,0.008083102,0.003195277],"genre_scores_gemma":[0.01563722,0.003025114,0.0247506,0.0003941515,0.00009003974,0.0014035,0.9522065,0.001799266,0.0006935887],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.03256415,"threshold_uncertainty_score":0.07496655,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0896398283551299,"score_gpt":0.3086688534880526,"score_spread":0.2190290251329227,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}