{"id":"W2940056130","doi":"10.1128/aac.00108-19","title":"Genomic Investigation of the Emergence of Invasive Multidrug-Resistant Salmonella enterica Serovar Dublin in Humans and Animals in Canada","year":2019,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministère de l'Agriculture, des Pêcheries et de l'Alimentation; Ste. Anne's Hospital; Public Health Agency of Canada","funders":"Wellcome Trust","keywords":"Salmonella enterica; Biology; Serotype; Salmonella; Multiple drug resistance; Microbiology; Antibiotic resistance; Resistome; Genotype; Virulence; Pathogen; Virology; Drug resistance; Integron; Gene; Genetics; Antibiotics; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001749909,0.000199596,0.0002181012,0.001569204,0.0009974327,0.0006864442,0.0003557924,0.0002892397,0.001297259],"category_scores_gemma":[0.0006542254,0.0001867405,0.0002933356,0.002137541,0.0005157969,0.0001027167,0.0004391267,0.0004452303,0.0001393419],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.005947352,"about_ca_system_score_gemma":0.004364325,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.888449,"about_ca_topic_score_gemma":0.9388639,"domain_scores_codex":[0.9996138,0.00002417414,0.00001605723,0.0001031181,0.00009974862,0.0001430642],"domain_scores_gemma":[0.9994381,0.00004711987,0.00009234848,0.00002159775,0.0002494046,0.0001515],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003119993,0.00004303646,0.9708727,0.00006200856,0.00006280283,0.0005599521,0.001518364,0.000196452,0.01668531,0.0002685163,0.0006628916,0.008756001],"study_design_scores_gemma":[0.000003084761,0.00003072086,0.9972411,0.00001119012,0.00001598337,0.0002236635,0.001068242,0.0001001555,0.000349693,0.00001357752,0.0009394573,0.000003028289],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948225,0.0002843916,0.0002130937,0.0001288951,0.000004099345,0.00002902119,0.002720777,0.00000721439,0.001790085],"genre_scores_gemma":[0.997033,0.0002654087,0.0002988833,0.00007493855,0.000002517185,0.000006596244,0.001400334,0.000003655717,0.0009147704],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.111551,"threshold_uncertainty_score":0.224416,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01303000734995716,"score_gpt":0.197514705860615,"score_spread":0.1844846985106579,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}