{"id":"W2940717918","doi":"10.1016/j.jinf.2019.04.013","title":"Avian influenza A viruses H5Nx (N1, N2, N6 and N8) show different adaptations of their codon usage patterns to their hosts","year":2019,"lang":"en","type":"letter","venue":"Journal of Infection","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Toronto","funders":"Natural Science Foundation of Guangdong Province; National Natural Science Foundation of China","keywords":"Influenza A virus subtype H5N1; Virology; Biology; Virus; Pathogenicity; Highly pathogenic; Clade; Host (biology); Avian influenza virus; Gene; Phylogenetic tree; Genetics; Microbiology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005550613,0.0003700592,0.0003748816,0.0002494826,0.001118948,0.0009678519,0.0003134598,0.007724558,0.004675918],"category_scores_gemma":[0.004226128,0.0001925581,0.0003522995,0.0002488564,0.0007219521,0.0006608904,0.0002316588,0.004836359,0.004450268],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001044999,"about_ca_system_score_gemma":0.0004301514,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002170135,"about_ca_topic_score_gemma":0.003088307,"domain_scores_codex":[0.9995368,0.0001529332,0.00006664295,0.00005149611,0.00008501681,0.0001071404],"domain_scores_gemma":[0.9984998,0.0008229036,0.0001398413,0.00007080976,0.0002720311,0.0001946785],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.0009072453,0.0002603854,0.0229219,0.0002824697,0.0000635796,0.06015267,0.001287991,0.0002347747,0.008059647,0.004361448,0.8473269,0.05414098],"study_design_scores_gemma":[0.0002849389,0.0004624666,0.03236145,0.0004009172,0.00006885041,0.05177089,0.002517731,0.001307267,0.003054869,0.007876777,0.8998107,0.00008319831],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"commentary","genre_gemma":"empirical","genre_scores_codex":[0.03737878,0.002311916,0.0004949868,0.8847221,0.04015267,0.00003687162,0.0001524027,0.00007882203,0.03467153],"genre_scores_gemma":[0.2084865,0.004418038,0.001171116,0.6426566,0.07896812,0.0000851755,0.0001897748,0.0000773955,0.06394724],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.007724558,"threshold_uncertainty_score":0.01564252,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1062278393674324,"score_gpt":0.3628207129427828,"score_spread":0.2565928735753504,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}