{"id":"W2940757041","doi":"10.1186/s40168-019-0680-z","title":"Metagenomic analysis of isolation methods of a targeted microbe, Campylobacter jejuni, from chicken feces with high microbial contamination","year":2019,"lang":"en","type":"article","venue":"Microbiome","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Research Foundation of Korea; Ministry of Food and Drug Safety; National Research Foundation","keywords":"Campylobacter jejuni; Biology; Metagenomics; Campylobacter; Microbiology; Feces; Isolation (microbiology); Enrichment culture; Agar; Bacteria; Food science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004718173,0.0005895976,0.0006208529,0.0008462354,0.0003183863,0.0005817231,0.0002849164,0.0004447327,0.0002885377],"category_scores_gemma":[0.0007746561,0.0002654479,0.000726821,0.0008566697,0.0002261013,0.0003532871,0.0004322351,0.0004553322,0.0001339641],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002577502,"about_ca_system_score_gemma":0.0003068919,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001456863,"about_ca_topic_score_gemma":0.001988898,"domain_scores_codex":[0.9994522,0.00008237474,0.00005559086,0.0001650037,0.0001744151,0.00007033002],"domain_scores_gemma":[0.9996001,0.0000905718,0.00007225187,0.00003305816,0.0001600007,0.00004404088],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000156571,0.00006970754,0.004366416,0.00008939144,0.00004476292,0.00004073702,0.00009654602,0.0001671658,0.992066,0.00001262948,0.00002227849,0.002867785],"study_design_scores_gemma":[0.00001294888,0.001406385,0.1363298,0.00004608464,0.0003883176,0.0003597298,0.0005004292,0.003943746,0.8553196,0.00006358571,0.001587736,0.00004180668],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955906,0.0007493751,0.002280782,0.0000483728,0.00001560096,0.00006102905,0.0008737735,0.00003202361,0.000348427],"genre_scores_gemma":[0.980195,0.001085312,0.01404689,0.0001262938,0.00001323372,0.0001789558,0.003397182,0.00005287119,0.0009042435],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001456863,"threshold_uncertainty_score":0.002896726,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00929530442397449,"score_gpt":0.2323770108995895,"score_spread":0.223081706475615,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}