{"id":"W2941009096","doi":"10.1016/j.meegid.2019.04.014","title":"Evaluating an automated clustering approach in a perspective of ongoing surveillance of porcine reproductive and respiratory syndrome virus (PRRSV) field strains","year":2019,"lang":"en","type":"article","venue":"Infection Genetics and Evolution","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":23,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université de Montréal","funders":"Agriculture and Agri-Food Canada; Swine Innovation Porc","keywords":"Biology; Cluster analysis; Porcine reproductive and respiratory syndrome virus; Cluster (spacecraft); Computational biology; Genetics; Virus; Evolutionary biology; Virology; Statistics; Computer science; Mathematics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003661353,0.0006635661,0.0005693454,0.00213322,0.001183391,0.002404344,0.001001698,0.001296472,0.001550835],"category_scores_gemma":[0.007123614,0.0002159816,0.0006964002,0.001666664,0.0002971443,0.00100571,0.000709061,0.0003751414,0.0004209378],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001925408,"about_ca_system_score_gemma":0.001798999,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03943162,"about_ca_topic_score_gemma":0.04834849,"domain_scores_codex":[0.9974396,0.001437118,0.00009499425,0.0004166594,0.0004218344,0.0001897483],"domain_scores_gemma":[0.9955851,0.002123621,0.0002200228,0.0002939074,0.001626581,0.0001507577],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"observational","study_design_scores_codex":[0.002143082,0.001198521,0.08515565,0.0003787774,0.000780629,0.0003707162,0.0006699158,0.5537108,0.02745641,0.005137052,0.004123038,0.3188755],"study_design_scores_gemma":[0.00005773982,0.0003493086,0.02615184,0.00001825799,0.0001204443,0.00008275826,0.0007970957,0.9641268,0.004766971,0.001856119,0.00164318,0.00002949025],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8638219,0.0004057796,0.1256369,0.0006428898,0.0001340067,0.0003646337,0.001176535,0.001028102,0.006789253],"genre_scores_gemma":[0.8593846,0.0001209109,0.1365044,0.00009840458,0.00004600528,0.00009421,0.001842634,0.00008919428,0.001819706],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03943162,"threshold_uncertainty_score":0.07840425,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04683842769808266,"score_gpt":0.3123971961347414,"score_spread":0.2655587684366588,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}