{"id":"W2941202137","doi":"10.1016/j.cancergen.2019.04.060","title":"Retrotransposon elements among initial sites of hepatitis B virus integration into human genome in the HepG2-NTCP cell infection model","year":2019,"lang":"en","type":"article","venue":"Cancer Genetics","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":false,"ca_institutions":"Memorial University of Newfoundland","funders":"Japan Agency for Medical Research and Development; Canadian Institutes of Health Research; Cancer Research Society","keywords":"Hepatitis B virus; Virology; Biology; Gene; Virus; Retrotransposon; Genome; Carcinogenesis; Reverse transcriptase; Genetics; Polymerase chain reaction","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001880425,0.0001601778,0.0002774258,0.0001300882,0.00006317544,0.00001289348,0.00009999442,0.0001088268,0.0001163191],"category_scores_gemma":[0.00001691345,0.000133098,0.00006697453,0.0002281078,0.00008220813,0.00006930035,0.00002972918,0.0001911991,0.00001345305],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002534945,"about_ca_system_score_gemma":0.00008304102,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.02951625,"about_ca_topic_score_gemma":0.1696308,"domain_scores_codex":[0.9987354,0.0000671229,0.0004321637,0.0002231493,0.0003408694,0.0002012786],"domain_scores_gemma":[0.999339,0.00002159475,0.0001465354,0.0002823385,0.0001712936,0.00003921561],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00002802934,0.00007425898,0.7884927,0.0001375596,0.00002341303,0.000002388361,0.004489385,0.0009044175,0.2047457,0.00002009375,0.00005435916,0.001027747],"study_design_scores_gemma":[0.0007837309,0.0004638142,0.913203,0.0001163727,0.0000832278,5.640989e-7,0.00005191707,0.006798836,0.07793883,0.0002184286,0.0002028054,0.0001384737],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964759,0.0006418273,0.00044717,0.00005332836,0.0001293683,0.0007583238,0.00004329236,0.00001817867,0.001432632],"genre_scores_gemma":[0.9947084,0.004067187,0.0005331335,0.0002473457,0.0001199129,0.0001120853,0.00007241371,0.00002272632,0.0001167874],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1401145,"threshold_uncertainty_score":0.9769463,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03196428444802954,"score_gpt":0.3233803061787565,"score_spread":0.2914160217307269,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}