{"id":"W2941864504","doi":"10.1099/acmi.0.000017","title":"Application of whole genome sequencing to query a potential outbreak of Elizabethkingia anophelis in Ontario, Canada","year":2019,"lang":"en","type":"article","venue":"Access Microbiology","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Public Health Ontario","funders":"","keywords":"Outbreak; Whole genome sequencing; Biology; Multilocus sequence typing; Genome; Genetics; rpoB; Typing; Computational biology; Gene; Virology; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003811783,0.0003438893,0.0002323625,0.001170131,0.001827271,0.0009956635,0.0003829627,0.0003380431,0.0006436896],"category_scores_gemma":[0.001270361,0.0002240183,0.0003268422,0.002608972,0.0003395482,0.0001908428,0.0005436248,0.0002885036,0.0001397493],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01135781,"about_ca_system_score_gemma":0.01550204,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9734527,"about_ca_topic_score_gemma":0.9839061,"domain_scores_codex":[0.999405,0.00002855179,0.00002778488,0.0001090233,0.000248882,0.0001808155],"domain_scores_gemma":[0.9991962,0.00008938918,0.00008533887,0.00003092473,0.0005028849,0.00009523599],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009797406,0.0001870681,0.6505511,0.0004314077,0.0002392044,0.005181444,0.007516562,0.009259598,0.24584,0.001167732,0.01003341,0.06861275],"study_design_scores_gemma":[0.0000339233,0.0001064958,0.943575,0.00005515172,0.00008386199,0.0005051919,0.008088364,0.01346457,0.01428083,0.000191088,0.01956429,0.00005139627],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.982464,0.0003716134,0.001948464,0.0003563853,0.0000170553,0.0001649616,0.00959716,0.0001350168,0.004945363],"genre_scores_gemma":[0.9749697,0.0006011527,0.009669787,0.0003122501,0.000006104494,0.00004517352,0.01205651,0.00004592763,0.002293321],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02654731,"threshold_uncertainty_score":0.08240712,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004230521854370876,"score_gpt":0.2126208890701227,"score_spread":0.2083903672157519,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}