{"id":"W2942178134","doi":"10.1186/s12879-019-3913-7","title":"An unusual case of Erysipelothrix rhusiopathiae prosthetic joint infection from the Canadian Arctic: whole genome sequencing unable to identify a zoonotic source","year":2019,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"Provincial Laboratory of Public Health; University of Calgary; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Faculty of Veterinary Medicine, University of Calgary","keywords":"Erysipelothrix rhusiopathiae; Medical microbiology; Biology; Parasitology; Whole genome sequencing; Amoxicillin; Septic arthritis; Microbiology; Medicine; Antibiotics; Genome; Immunology; Arthritis; Zoology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003014323,0.001874706,0.0007495746,0.002103039,0.004373474,0.001708853,0.001266001,0.002912835,0.001457055],"category_scores_gemma":[0.002223969,0.0007711874,0.0006978821,0.001958382,0.001974267,0.0005341045,0.001370212,0.002398323,0.0004122441],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004538639,"about_ca_system_score_gemma":0.005667776,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.4032197,"about_ca_topic_score_gemma":0.4336681,"domain_scores_codex":[0.9991063,0.00004996758,0.00004882898,0.0001611946,0.0002336489,0.0003998992],"domain_scores_gemma":[0.9987475,0.0002869951,0.0002468908,0.00006984878,0.0001796526,0.0004690955],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"case_report","study_design_gemma":"case_report","study_design_scores_codex":[0.00008143427,0.00004824904,0.02551543,0.0001049283,0.00002216119,0.965113,0.001330746,0.0001692612,0.003849729,0.0002430316,0.0007158358,0.002806152],"study_design_scores_gemma":[0.00001815519,0.00008188302,0.04581343,0.00007966616,0.00006385818,0.9472283,0.002002771,0.0004728488,0.00119685,0.0001573542,0.002845068,0.0000399077],"study_design_candidate":"case_report","study_design_consensus":"case_report","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9749802,0.003051275,0.003194473,0.002332401,0.0002971062,0.0002000743,0.0007247817,0.00009842758,0.01512116],"genre_scores_gemma":[0.9941306,0.001568356,0.001703242,0.0007544712,0.000137654,0.00001739847,0.0002292149,0.00002993381,0.001429096],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5967803,"threshold_uncertainty_score":0.8017454,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02067497904905233,"score_gpt":0.2790674827595397,"score_spread":0.2583925037104873,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}